RNA id: XR_005640293.1



Basic Information


Item Value
RNA id XR_005640293.1
length 291
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120565827
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14787068 ~ 14791606 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTTCTGGAACAGACAAATTGTCAAGACTCCTCATACATAGAGACCAAATGTGACAAAGACAGAAGCCGAAATATACACTGCCATGGGCTTTCGTCGTGCGTTCCAGtgacaaagATTTCCCAGTCAGGGGTTCCTTGGTGCTTGGAGGTCAGGTTGGGACTGCCTGGATTTGAGAACCGTGTCCTATTTGTGAAGAGAGCAAAGCCTGCCCAGTCTGAATAATTTGCTGAAACCCGGATAACGAGCTCATGGTCTCTGCAAGGTCGATGGCTGAAGATTTTGCCATAAAAC

Function


GO:

id name namespace
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU128781 lncRNA upstream 86923 14699550 ~ 14700145 (+) False LOC120565380
TU128779 lncRNA upstream 88506 14689382 ~ 14698562 (+) False LOC120565380
TU128778 lncRNA upstream 88506 14695682 ~ 14698562 (+) False LOC120565380
TU128745 lncRNA upstream 148022 14546536 ~ 14639046 (+) True G95447
TU128645 lncRNA upstream 417842 14368922 ~ 14369226 (+) True G95372
TU128805 lncRNA downstream 87476 14879082 ~ 14879287 (+) True G95492
TU128802 lncRNA downstream 131375 14922981 ~ 14923836 (+) False dennd1b
TU128807 lncRNA downstream 132346 14923952 ~ 14925603 (+) True G95493
TU128809 lncRNA downstream 132855 14924461 ~ 14925603 (+) False G95493
TU128812 lncRNA downstream 138906 14930512 ~ 14932081 (+) True G95496
XM_039811168.1 mRNA upstream 82715 14692504 ~ 14704353 (+) True LOC120565380
XM_039810178.1 mRNA upstream 150014 14624279 ~ 14637054 (+) True abhd8b
XM_039810569.1 mRNA upstream 167865 14579027 ~ 14619203 (+) True ano8b
XM_039810568.1 mRNA upstream 167865 14591528 ~ 14619203 (+) False ano8b
XM_039810570.1 mRNA upstream 167865 14591528 ~ 14619203 (+) False ano8b
XM_039812299.1 mRNA downstream 18763 14810369 ~ 14912885 (+) False dennd1b
XM_039812295.1 mRNA downstream 18764 14810370 ~ 14923845 (+) True dennd1b
XM_039812296.1 mRNA downstream 18764 14810370 ~ 14919627 (+) False dennd1b
XM_039812297.1 mRNA downstream 18764 14810370 ~ 14919627 (+) False dennd1b
XM_039812298.1 mRNA downstream 18765 14810371 ~ 14919627 (+) False dennd1b
TU128764 other upstream 165655 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 1404324 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1566696 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1686623 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 3342535 11429031 ~ 11444533 (+) False LOC120565923
XR_005640328.1 other downstream 18762 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 18762 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 1528888 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3064031 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 3074942 17866548 ~ 17866681 (+) True LOC120566215

Expression Profile


XR_005640293.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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XR_005640293.1 Expression in each Bioproject

Bar chart with 2 bars.
XR_005640293.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.