RNA id: XR_005640303.1


Basic Information

Item Value
RNA id XR_005640303.1
length 1482
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC120565893
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7892224 ~ 7895718 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCATCCTGATCACACAATCACCGCTCCTCCTtgcttcctcctccttcccgTTGCCATTCACTAGCTGGAGAAACACGCGTTTTATCCACCGGCCTGGTCTCACACCGACGATACAGAAAAAACAGCAAATTTGACATAACGTGTTGAGCATTTGTCTTTGAATACTAGTTTAAGCTCAACAACTTTACCCAGGAAGGTGAGTTAAGAGCTTGAATAAGATTTTCTAATAAACATTAAGCAGGAAATGCCTTCCCCAAAACAGTGTAACAATGGTGTATTAGTGTTTGATATTCAATCAGTATCAATATTACTAACATCCACATGGTGAAACATTAAGGGAATGCATTTCCTGTGTTGCATCAGGATAATTTAACATCGTGAAAAAGGCATGGCTCGTGCAATGTGTGATTTGTTAGCAGAGCAAAACCTCAATACCTACCGGATTAATTTGCTTGCATGAACATGTTAGTGTTTCTCACAAATCCATCAATGTCAATGAGTGTGATttcgtttttcttttaatgtttttctgtaGACTTGTTTACACCCTTTCCTTTTTGTGCATGCTGGCATGTCATTGTGTCATTTTTCAAGTCAACACTAATTGAATTTTTACCAAGAACAGTTTACAATAGAGTCACAGTGATGGGAAAAATTAGTGTTGGTTAGACATCGGACATTTGATTTTTGAATTTATGTTGAAATCTATAATGCTCTGACTAGCTATATGCTGTGATAAACCAGGGTCACTTGGTGCTGCTTGAtctgtattattatataaactTCCTCTGAATATACATTTGATAAATGCCTTTGCAGGATGAGCATAATAACGATGGGCTAAAGGGTTTTATTGGCACTTCAGAAAGCTACTGTCATTTAAAAACATAGAATAAGCTAAAATCAGAAATTCCATGATGTTAAATTAATTTCCCCATCTGGCTAATTATAACTTAAAAgctgtgtttcctttttttaatgaataCTGTAGTAGCAATTACTGTTATGTACTTGAAAGCAGTCGTCCCAAGCAATGGCTTTATAAGCAATCTTGGGCTTTTATAAGGATTTATATGAAAGTGTAAATTACTTGTTGGTTTGGGAAATCATTGTGTAGCTTCGCTTATAATCGACTGCCATTTAATCAAAAGCGTTAGCACCCTGGTGTTAACTTTCCTTTACTTGCATATATTCTTGAATGTGAGCCAAGTTGGGACATTTCCTTTACAAATTTACAAGCAAGTAGATTTCATTCACTAAACAATTTTAGTTTATCTGCATGGGTTTCTTCAAATTTTCTGCATGCTGCTTGCTTTTCTCTGGGACTGATTTGTAGACTCTTGACTGTTGAGACTAGAGCTGGCCCGATACCGTTTTTTGcttaccgattccgatacctgaacttgcgtatcggccgataccaagtactgatccgataccagtgtgtcatatatttgattatgttttaacagctgtgtact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126854 lncRNA upstream 8396 7878919 ~ 7883828 (+) False LOC120565294
TU126855 lncRNA upstream 8396 7880538 ~ 7883828 (+) False LOC120565294
TU126802 lncRNA upstream 276797 7557254 ~ 7615427 (+) True G93986
TU126801 lncRNA upstream 366881 7524990 ~ 7525343 (+) True G93985
XR_005640327.1 lncRNA upstream 496946 7394373 ~ 7395278 (+) True LOC120566054
TU126892 lncRNA downstream 57697 7953415 ~ 7955102 (+) True G94056
TU126896 lncRNA downstream 95570 7991288 ~ 7991555 (+) True G94057
TU126898 lncRNA downstream 207275 8102993 ~ 8103363 (+) True G94059
TU126899 lncRNA downstream 207772 8103490 ~ 8103804 (+) True G94060
TU126907 lncRNA downstream 254744 8150462 ~ 8150870 (+) True G94062
XM_039810957.1 mRNA upstream 2047 7880460 ~ 7890177 (+) True LOC120565294
XM_039810958.1 mRNA upstream 18238 7868591 ~ 7873986 (+) True LOC120565295
XM_039810959.1 mRNA upstream 18238 7868605 ~ 7873986 (+) False LOC120565295
XM_039811558.1 mRNA upstream 24496 7862214 ~ 7867728 (+) True LOC120565646
XM_039810225.1 mRNA upstream 286594 7603460 ~ 7605630 (+) True LOC120564954
XM_039811516.1 mRNA downstream 427 7896145 ~ 7905146 (+) True LOC120565614
XM_039812447.1 mRNA downstream 312735 8208453 ~ 8214500 (+) True rgs4
XM_039810246.1 mRNA downstream 1125799 9021517 ~ 9033680 (+) True LOC120564973
XM_039810130.1 mRNA downstream 1161623 9057341 ~ 9062036 (+) True LOC120564878
XM_039812316.1 mRNA downstream 1171460 9067178 ~ 9070676 (+) True LOC120566074
TU126750 other upstream 541637 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1523870 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1678207 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1852105 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 3179039 4711561 ~ 4713185 (+) False trmt1l
TU126885 other downstream 2954 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 341652 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 341652 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1251444 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 1656578 9552296 ~ 9557568 (+) True G94239

Expression Profile