RNA id: XR_005640318.1


Basic Information

Item Value
RNA id XR_005640318.1
length 1666
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id LOC120566005
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37569084 ~ 37574819 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACCACAAATCCAAATCCAGGGAACATAAAAAGGGAGTTTAATATCAGCCTCATGTTAAATTCGACAGACAGGAAGACTGGATTAACCTAATTCTTCTGTTCCGATTTGAAGGGGTTCATATTTCTGTGTGGAACAAACAGCCCCTGAACTAAACACAAACTCACTCCAGCAGTAATCGGCAATCAGCAACAAGCAGCAGGTGTGCGAAGACCTGGGACTTTAAAAGTAGGAGGAAACAGAAGGAGAAGACACCGAGTGGATTCGGCGTGAAGCAGAAGAAGAGACGCGGGGTGAAACGACGGACCTGGGGAGCAGGTCGCGCCCGATGGCGTAGACGCCGAAGCCAGCAGCACATCTTTTGACCGCTAATTGAAACGGCGGTtggTTGCAGGGgaagagggggagaaagggCCGGCAGTAGGCTACATCTTGGTGGCAAGTGACCACAGACGGAGCGGTGCTTCCCAGTCTCAGTGTCAACCTCGTCCTCCCCACACGCCAGCGAAGAGAAAGAAACGGGAAAACAACAGACAtgagcagcagagcagcaggcGCTGAAAAGGAGCAAGAGGCCACCACCGAGGATTCACCGGAACCTGAAGCACAGCAGCTTGTGTCCGTTCGGCGTGAAGACTCCGGCCTGGGTGGGTAGCAGGGACGCTATCGCCTCAGCAAAGTGTGAGTAGGCTAGTGAAGGAGTTGAGCGGCGGGCACTGGGAGGCTGGCTGCAGGGCCAGGCAAGTGTGAAAAGTAAGGGGCATTGGTGTGTGTGGCTGGAGACTGGCGTGTGTGTTTGCGCTCCCTAGGCGAGGGTCGTGATGGCCGATCTGTGACGAGCTGGGGAAGTAGACCGTGGCGGTGAAGGGAAGGAGCGCCGTCGGCCAGAGAAGGGGAAGCCACGTGGAACACCAGAGGGGTGTAGTCACGATTCACCCCTCTTTCAGGACACTTCTGTTCCCCTCTGATGTGTGCAGATGCTCCACATAGTGAAAGGAAGTGAGTCAAACATGAATTGAAAAGACAGAGAACACTTTCACTACACATCCACCCCCCTACGGAAGACTTTCGCTGAGCACGGCTAAAAGAAAATGCGGAGGTGTGGCACAGCGCTGTAAACCGTCCGCAGCCAGATGCTTGTTTGTTGTCTTTCCGAGGCCTGGAGAGCAACAAGATAATGTCTCCTTTGAGAGTGAACAATAATGGTCAATGAATGTTTTATGGCCTCTCTGAGAGACAATGTCAATGATGTCTTTATTGCCTTCACATGTTGAAGAGCCTGATTCCTAGATGAGAACCAAAGTCTGCGTGCTCTGACAATATAAATGCTGACACACGCGGACGCTTTGGGGAaacaattatgtttttataatgaaGCATGTTTTCTTAGTGCTATAGCTTTGTCCTCTGCTGTGTTCAACTATTAATATTTAAGAGGCAACATGTATTTTATAACATCATTACTGTCAAAATATGATAAACAAATGAGGCCATACTTACTCCAAATACTATACTTAGTTCAAGTGGTTTTCCAAAGTAAGACCAGCCCTTTTCTTTCTGTCACAAACAGGATGTTGctaattgttttgttgtttgtgctgGAACAATAGCatgtctcctcttctctctttcattcttcagctctcccccttctctctctctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135879 lncRNA upstream 94007 37466174 ~ 37475077 (+) True G100846
TU135880 lncRNA upstream 369629 37199237 ~ 37199455 (+) True G100847
TU135764 lncRNA upstream 466195 37100787 ~ 37102889 (+) True G100749
TU135762 lncRNA upstream 521966 37046901 ~ 37047118 (+) True G100747
TU135750 lncRNA upstream 525518 37039248 ~ 37043566 (+) True G100738
TU135946 lncRNA downstream 84022 37658841 ~ 37659093 (+) True G100906
TU135960 lncRNA downstream 176042 37750861 ~ 37752138 (+) True G100917
TU135969 lncRNA downstream 191372 37766191 ~ 37766776 (+) True G100926
XR_005640175.1 lncRNA downstream 234449 37809268 ~ 37813410 (+) True LOC120565000
TU135981 lncRNA downstream 238964 37813783 ~ 37814040 (+) True G100938
XM_039812190.1 mRNA upstream 3183 37532968 ~ 37565901 (+) True plpp3
XM_039812191.1 mRNA upstream 5337 37532503 ~ 37563747 (+) False plpp3
XM_039812140.1 mRNA upstream 56170 37491661 ~ 37512914 (+) True LOC120565974
XM_039811475.1 mRNA upstream 80946 37399000 ~ 37488138 (+) False dab1a
XM_039811470.1 mRNA upstream 81011 37156476 ~ 37488073 (+) False dab1a
XM_039810889.1 mRNA downstream 124235 37699054 ~ 37750195 (+) True usp24
XM_039810892.1 mRNA downstream 124235 37699054 ~ 37750195 (+) False usp24
XM_039810890.1 mRNA downstream 124235 37699054 ~ 37750195 (+) False usp24
XM_039810893.1 mRNA downstream 124235 37699054 ~ 37750195 (+) False usp24
XM_039810894.1 mRNA downstream 124235 37699054 ~ 37750195 (+) False usp24
TU135875 other upstream 79012 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 436779 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 870215 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 1034545 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 1034545 36532726 ~ 36534539 (+) False smim24
TU136417 other downstream 1302392 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 1885627 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 1986303 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 2940274 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 3650272 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile