RNA id: XR_005640327.1


Basic Information

Item Value
RNA id XR_005640327.1
length 281
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120566054
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7394373 ~ 7395278 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTCCACGTCGTCTTTATTGACAGACGGAATTAAAGCGAAACACCTATATCCTATGGATGATCTGCTGGGTGTCACACATAATCTGGCATCCGACTAGAAAGTAACCTAACTCCTGAGCTTTTTTTGTAAACGCCTCCGATCCCCTCTGCCTGTCAGTGCGTCTGAGCTGTGTGCCACACGCTGAaccacacacaggaacacaacaCAAAGACCACAAAGACGACAAAGCCGGGCTAAAAATACCTCGATGTGTTGAAGATGTAGGCCTAGCAGAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126744 lncRNA upstream 66687 7327171 ~ 7327686 (+) True G93933
TU126743 lncRNA upstream 70947 7322066 ~ 7323426 (+) True G93932
TU126742 lncRNA upstream 72918 7318842 ~ 7321455 (+) True G93931
TU126703 lncRNA upstream 107220 7271936 ~ 7287153 (+) True G93912
TU126682 lncRNA upstream 158654 7233146 ~ 7235719 (+) True G93906
TU126801 lncRNA downstream 129712 7524990 ~ 7525343 (+) True G93985
TU126802 lncRNA downstream 161976 7557254 ~ 7615427 (+) True G93986
TU126854 lncRNA downstream 483641 7878919 ~ 7883828 (+) False LOC120565294
TU126855 lncRNA downstream 485260 7880538 ~ 7883828 (+) False LOC120565294
XR_005640303.1 lncRNA downstream 496946 7892224 ~ 7895718 (+) True LOC120565893
XM_039811822.1 mRNA upstream 15029 7353848 ~ 7379344 (+) True LOC120565797
XM_039811515.1 mRNA upstream 108614 7263547 ~ 7285759 (+) True LOC120565613
XM_039811275.1 mRNA upstream 267101 7108149 ~ 7127272 (+) True igfbp3
XM_039811274.1 mRNA upstream 326439 7007170 ~ 7067934 (+) True si:ch211-191a24.3
XM_039811272.1 mRNA upstream 423073 6965547 ~ 6971300 (+) True si:ch211-191a24.4
XM_039812274.1 mRNA downstream 2860 7398138 ~ 7413692 (+) True LOC120566053
XM_039812276.1 mRNA downstream 2862 7398140 ~ 7413692 (+) False LOC120566053
XM_039812533.1 mRNA downstream 20163 7415441 ~ 7423820 (+) True LOC120566212
XM_039812332.1 mRNA downstream 184914 7580192 ~ 7581837 (+) True foxq1b
XM_039812331.1 mRNA downstream 190863 7586141 ~ 7590299 (+) True foxf2b
TU126750 other upstream 43786 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1026019 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1180356 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1354254 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 2681188 4711561 ~ 4713185 (+) False trmt1l
TU126885 other downstream 503394 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 842092 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 842092 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1751884 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 2157018 9552296 ~ 9557568 (+) True G94239

Expression Profile