RNA id: XR_005640351.1


Basic Information

Item Value
RNA id XR_005640351.1
length 74
RNA type snoRNA
GC content 0.36
exon number 1
gene id LOC120566217
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22576129 ~ 22576202 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACCTGTGATGAAAAGATTCTGCCAAATGATTTCTCTGATTATACTCCTTACCGTTCCATATATTTCTGAGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131333 lncRNA upstream 253274 22322492 ~ 22322855 (+) True G97338
TU131330 lncRNA upstream 259771 22313648 ~ 22316358 (+) True G97335
TU131289 lncRNA upstream 401736 22158057 ~ 22174393 (+) True G97297
TU131286 lncRNA upstream 418171 22156111 ~ 22157958 (+) True G97295
TU131249 lncRNA upstream 482755 22091389 ~ 22093374 (+) True G97263
TU131439 lncRNA downstream 18294 22594496 ~ 22595277 (+) False G97410
TU131438 lncRNA downstream 18585 22594787 ~ 22595277 (+) True G97410
TU131444 lncRNA downstream 81297 22657499 ~ 22676178 (+) True rnf11b
TU131445 lncRNA downstream 81297 22657499 ~ 22674237 (+) False rnf11b
XR_005640278.1 lncRNA downstream 204405 22780607 ~ 22800145 (+) True LOC120565733
XM_039812096.1 mRNA upstream 5829 22530087 ~ 22570300 (+) False osbpl9
XM_039812097.1 mRNA upstream 5829 22530087 ~ 22570300 (+) False osbpl9
XM_039812099.1 mRNA upstream 5829 22548893 ~ 22570300 (+) True osbpl9
XM_039812098.1 mRNA upstream 5829 22553561 ~ 22570300 (+) False osbpl9
XM_039812095.1 mRNA upstream 47120 22514698 ~ 22529009 (+) False abl2
XM_039810961.1 mRNA downstream 995 22577197 ~ 22582655 (+) True tor3a
XM_039810960.1 mRNA downstream 8004 22584206 ~ 22589319 (+) True calr
XM_039812081.1 mRNA downstream 15441 22591643 ~ 22623535 (+) True eps15
XM_039812083.1 mRNA downstream 15441 22591643 ~ 22623535 (+) False eps15
XM_039812082.1 mRNA downstream 15441 22591643 ~ 22623535 (+) False eps15
XR_005640354.1 other upstream 981 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1205 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 1457 22574591 ~ 22574672 (+) True LOC120566225
XR_005640360.1 other upstream 2437 22573630 ~ 22573692 (+) True LOC120566226
XR_005640353.1 other upstream 2882 22573167 ~ 22573247 (+) True LOC120566219
TU131620 other downstream 745320 23321522 ~ 23321909 (+) False pole4
TU131697 other downstream 898580 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 2205716 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 2276099 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 2291815 24868017 ~ 24873874 (+) False elovl1b

Expression Profile