RNA id: XR_005640359.1


Basic Information

Item Value
RNA id XR_005640359.1
length 82
RNA type snoRNA
GC content 0.32
exon number 1
gene id LOC120566225
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22574591 ~ 22574672 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTGTCAATGATGATATTGTTTACAAAACAATGGGAATCTCTCTGAATAAGAGTGAAAGAATACTTTTTACTGATGCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131333 lncRNA upstream 251736 22322492 ~ 22322855 (+) True G97338
TU131330 lncRNA upstream 258233 22313648 ~ 22316358 (+) True G97335
TU131289 lncRNA upstream 400198 22158057 ~ 22174393 (+) True G97297
TU131286 lncRNA upstream 416633 22156111 ~ 22157958 (+) True G97295
TU131249 lncRNA upstream 481217 22091389 ~ 22093374 (+) True G97263
TU131439 lncRNA downstream 19824 22594496 ~ 22595277 (+) False G97410
TU131438 lncRNA downstream 20115 22594787 ~ 22595277 (+) True G97410
TU131444 lncRNA downstream 82827 22657499 ~ 22676178 (+) True rnf11b
TU131445 lncRNA downstream 82827 22657499 ~ 22674237 (+) False rnf11b
XR_005640278.1 lncRNA downstream 205935 22780607 ~ 22800145 (+) True LOC120565733
XM_039812096.1 mRNA upstream 4291 22530087 ~ 22570300 (+) False osbpl9
XM_039812097.1 mRNA upstream 4291 22530087 ~ 22570300 (+) False osbpl9
XM_039812099.1 mRNA upstream 4291 22548893 ~ 22570300 (+) True osbpl9
XM_039812098.1 mRNA upstream 4291 22553561 ~ 22570300 (+) False osbpl9
XM_039812095.1 mRNA upstream 45582 22514698 ~ 22529009 (+) False abl2
XM_039810961.1 mRNA downstream 2525 22577197 ~ 22582655 (+) True tor3a
XM_039810960.1 mRNA downstream 9534 22584206 ~ 22589319 (+) True calr
XM_039812081.1 mRNA downstream 16971 22591643 ~ 22623535 (+) True eps15
XM_039812083.1 mRNA downstream 16971 22591643 ~ 22623535 (+) False eps15
XM_039812082.1 mRNA downstream 16971 22591643 ~ 22623535 (+) False eps15
XR_005640360.1 other upstream 899 22573630 ~ 22573692 (+) True LOC120566226
XR_005640353.1 other upstream 1344 22573167 ~ 22573247 (+) True LOC120566219
XR_005640356.1 other upstream 1787 22572723 ~ 22572804 (+) True LOC120566222
XR_005640361.1 other upstream 2040 22572469 ~ 22572551 (+) True LOC120566227
XR_005640352.1 other upstream 2452 22572059 ~ 22572139 (+) False LOC120566218
XR_005640355.1 other downstream 171 22574843 ~ 22574924 (+) True LOC120566221
XR_005640354.1 other downstream 395 22575067 ~ 22575148 (+) True LOC120566220
XR_005640351.1 other downstream 1457 22576129 ~ 22576202 (+) True LOC120566217
TU131620 other downstream 746850 23321522 ~ 23321909 (+) False pole4
TU131697 other downstream 900110 23474782 ~ 23477818 (+) True G97596

Expression Profile