RNA id: TU137700


Basic Information

Item Value
RNA id TU137700
length 314
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G102273
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 210129 ~ 210442 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGAGGGGGGTGTCCTGAGGCTCTGTGGGCTGTGAGGTGAGGGAGCTGAGGGACAGGGctagctgactgaggggactttTCTCTATGTTTCTCTCTTGGTATTGTAGTGCTTTGTAGTGAAAACAATGGGGGTTGCTTGTTTTCAGGTGGTTGTAGAATTTGATGGATCTTTTTTCAATTGTAATTTGGAGGGGATATTGGCCTAGTTCTGCTCGGCAGGCGTTATTTGGGATGTGTCTTGGTAGGTGTAGAAGGTTTCTACAAAATTCTACATGGAATTTCTCAATTGGGTGATTGTCCCAGTCAGTAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137655 lncRNA downstream 143116 65234 ~ 67013 (-) True G102240
TU137657 lncRNA downstream 143116 65501 ~ 67013 (-) False G102240
TU137656 lncRNA downstream 143116 65635 ~ 67013 (-) False G102240
TU137659 lncRNA downstream 145630 64025 ~ 64499 (-) True G102241
TU137617 lncRNA downstream 147548 62346 ~ 62581 (-) True G102222
XR_005640573.1 lncRNA upstream 16786 227228 ~ 229439 (-) True LOC120567447
XR_005640572.1 lncRNA upstream 19935 230377 ~ 231456 (-) True LOC120567446
TU137748 lncRNA upstream 173007 383449 ~ 388245 (-) True G102309
TU137794 lncRNA upstream 255973 466415 ~ 468450 (-) False tmsb2
TU137796 lncRNA upstream 277856 488298 ~ 488647 (-) True G102341
XM_039812730.1 mRNA downstream 13688 193931 ~ 196441 (-) True il12ba
XM_039813786.1 mRNA downstream 22779 136595 ~ 187350 (-) False ebf1a
XM_039813783.1 mRNA downstream 22782 133516 ~ 187347 (-) True ebf1a
XM_039813785.1 mRNA downstream 22783 133516 ~ 187346 (-) False ebf1a
XM_039813784.1 mRNA downstream 23633 133516 ~ 186496 (-) False ebf1a
XM_039812960.1 mRNA upstream 101490 311932 ~ 336042 (-) False sh3tc2
XM_039812961.1 mRNA upstream 101490 311932 ~ 336042 (-) False sh3tc2
XM_039812962.1 mRNA upstream 101490 311932 ~ 336041 (-) False sh3tc2
XM_039812958.1 mRNA upstream 101490 311932 ~ 333267 (-) True sh3tc2
XM_039812959.1 mRNA upstream 101490 311932 ~ 331935 (-) False sh3tc2
TU137703 other upstream 10150 220592 ~ 231444 (-) True G102276
TU137704 other upstream 20232 230674 ~ 231444 (-) False G102276
TU137926 other upstream 628519 838961 ~ 841546 (-) False insb
XR_005640447.1 other upstream 1970601 2181043 ~ 2197917 (-) True sh2d1aa
XR_005640435.1 other upstream 2681977 2892419 ~ 2898545 (-) False pabir2

Expression Profile