RNA id: TU138113


Basic Information

Item Value
RNA id TU138113
length 477
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G102606
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 1552513 ~ 1552989 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGATGGATGGGAGACtttgggaagggggggggggtcacgaCTGCTGTTTTCCAAAGCAGTGGAACTACCTGAGTGTCCATTGAGCGCTGGAAGAGGGAACATAAAATTCCACTTAATTGGACCACACAGTGCTTCAGCACTCTGCCTCCAATGTTATCCGGCCCCGGACTCTTCGGCACATTAGTCTTCTCAAACACTCGCTGGACCATCTCCTCCGTAATAATCAAAGTGCTCTCCATCTCAGCATCGTCTATTACAGTCTGTTGCCAAGCAGAGACATTGTCACTGTCATTTATTTCAAAGCGGGTAAAATGTTCATTTAAGTTGTTGGCCAGAGCACGGGATGCTGTGTCCTCCATGAAATCATTTTTTTCCCTGTCTTGAAGGGGGCGTTGGCCATCAACTTTATACCAGTCCAAGCAGCCCTTGAATTCCCCGCAGTACTCTGTACCTTGTCCTTGTACTGACACCTGGCC

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138078 lncRNA downstream 287311 1264792 ~ 1265202 (-) True G102573
TU137968 lncRNA downstream 344785 1207326 ~ 1207728 (-) True G102487
TU137966 lncRNA downstream 349957 1202073 ~ 1202556 (-) True G102485
TU137945 lncRNA downstream 583454 964250 ~ 969059 (-) True G102467
TU137941 lncRNA downstream 646272 905928 ~ 906241 (-) True G102463
TU138114 lncRNA upstream 338 1553327 ~ 1553542 (-) True G102607
TU138116 lncRNA upstream 2867 1555856 ~ 1556436 (-) True G102609
TU138132 lncRNA upstream 40846 1593835 ~ 1601535 (-) True G102621
TU138151 lncRNA upstream 81605 1634594 ~ 1662199 (-) True G102638
XR_005640531.1 lncRNA upstream 383584 1936573 ~ 1937187 (-) True LOC120567184
XM_039813222.1 mRNA downstream 1886 1546383 ~ 1550627 (-) True eif4ebp3l
XM_039813220.1 mRNA downstream 12021 1529411 ~ 1540492 (-) True LOC120566654
XM_039814413.1 mRNA downstream 710895 838946 ~ 841618 (-) True insb
XM_039814478.1 mRNA downstream 770721 779637 ~ 781792 (-) False med7
XM_039814479.1 mRNA downstream 770882 779637 ~ 781631 (-) True med7
XM_039813225.1 mRNA upstream 21403 1574392 ~ 1576708 (-) True nxt2
XM_039813361.1 mRNA upstream 196784 1749773 ~ 1767405 (-) True LOC120566744
XM_039813362.1 mRNA upstream 197812 1750801 ~ 1767408 (-) False LOC120566744
XM_039813366.1 mRNA upstream 215549 1768538 ~ 1783651 (-) True LOC120566745
XM_039813365.1 mRNA upstream 215549 1768538 ~ 1783491 (-) False LOC120566745
TU137926 other downstream 710967 838961 ~ 841546 (-) False insb
TU137703 other downstream 1321069 220592 ~ 231444 (-) True G102276
XR_005640447.1 other upstream 628054 2181043 ~ 2197917 (-) True sh2d1aa
XR_005640435.1 other upstream 1339430 2892419 ~ 2898545 (-) False pabir2
XR_005640589.1 other upstream 1343182 2896171 ~ 2896313 (-) True LOC120567496
TU138946 other upstream 2350002 3902991 ~ 3925309 (-) True G103268
TU138957 other upstream 2376065 3929054 ~ 3933202 (-) False smim19

Expression Profile