RNA id: XM_039813922.1


Basic Information

Item Value
RNA id XM_039813922.1
length 4642
RNA type mRNA
GC content 0.46
exon number 12
gene id slc7a2
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 2725460 ~ 2740487 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCTGGAGTCTAGGGGCAAAGCGAGGGCAGATCCTATGAAGAAACTCTGAGAGGAGGCGTAAAAAGTACTGCTCTGCTCAGTGTACATACCAGCATATGAATAAGTGCTGAGCACAGTGCTGAAGCAGAGTTTCGAGGCAGCAGTTCATGGGAGCAGTGGATCTTATTTGACTTTTTACCTGCACTTCATGTGCAGCTGATCTGCTGtgcaagctggaaaaaaacGCACTGACACTTCTGACAGCTTGTTTTTTTGGTGTCTGAACCTAGACCCTTCATATCCACGCAGAGTCATTCTAACAGCAGGTGTCAACATGTTGGAGCAGGTTCTGTCATTCGGCCGCTCCCTGGTGCGCAGGAAAGTGGTCGACATGAGCAGCCTGGAGGACTCAAAGCTGTGCCGCTGCCTAGGAACCGTCGACCTCATCGCCCTAGGAGTTGGCAGCACTCTGGGTGCCGGCGTCTACGTCCTGGCCGGCGAGGTGGCAAAGGGCGACTCAGGCCCCAGCATAGTCATCTCCTTCTTAATTGCCGCCCTAGCCTCGGTCATGGCCGGCCTGTGTTACGCTGAGTTTGGCGCACGCGTCCCCAAGACCGGCTCTGCTTACCTTTATAGCTATGTGACTGTAGGAGAGATCTGGGCCTTCATCACGGGTTGGAACCTCATTCTCTCCTATGTGATTGGTACCTCCTCAGTTGCCAGGGCTTGGAGTGGCACATTTGATGAAATCATAGGGGGACACATAGAGGTATTCTGTAAGAACTACTTCAGAATGAACTCTCCTGGTTTGGCTCAGTACCCTGACTTCTTTGCCGTCTGCCTGATACTGCTGCTTTCTGGACTCCTGTCGTTTGGCGTGAAGGAGTCAGCCTGGGTCAATAAAGTCTTCACGTCAATCAACGTGCTCGTACTCTTGTTCGTCATCATCTCCGGCTTCGTCaaaggagacacacacaactgGAAGATAACTGAAGAATCCCTTATAAATGTCACCATAGTTACAAGGAACTTGACGGTGACGGCCAACGTGAGCAGTGATTATGGAGTCGGAGGATTTATGCCCTACGGCTTCAGTGGGACCTTAGCTGGGGCTGCCACCTGCTTTTATGCTTTTGTTGGATTTGACTGCATTGCAACTACAGGCGAGGAGGTGAAGAACCCTCAGAGAGCCATTCCCATCGGCATCGTGGTGTCACTGACCGTGTGTTTCCTGGCGTACTTTGGCGTGTCAGCCGCACTCACGCTGATGATGCCCTACTACCTGCTGGACGAGAAGAGTCCTCTGCCCATGGCTTTTGAATATGTGGACTGGGGCCCTGCAAAATATGTGGTCGCTGCAGGTTCACTGTGTGCCCTCTCCACCAGTCTGCTGGGCTCCATTTTCCCCATGCCTCGTGTAATCTATGCTATGGCACAGGATGGGGTGCTTTTCAAAGTCTTAGCCCGAATCAATCCTAAGACGAAGACCCCACTTATTGCCACTATGACATCTGGTGTAGTAGCAGCCATCATGGCCTTCCTGTTCGACCTAAAAGCTCTGGTTGACATGATGTCCATTGAAACTTtgcagaCTTATGATCTTTAACCCTTGACGCCTCCGCGGTCCAGGTACCAGCCAGATGGAGTCCTAGAGCGGCGGGCAGGCACCGGTGAGAGGGACTACCTGTCCTCTGTGGAGGGTGAGTCTGAACTGACAGAGTCGGAGTCCCACCTAAACATGCTGAAGGGTGGCAGCTCCACCCTGCAGACTGTCCTGCACCCTCCCGCCTCACCCTCTGAGCATTCCTCCAGTGTGGTCAACATGTCCGTCTGTGTGCTAGTGCTGGTAGTGTGCGTGGTCAGCTATCTCACCACGTACCACATCTACTCCATCCTTGGTATGGAGGTGTGGATCCTGGCGtcgctgtctgtgtgtctcctcaTCTTCAGCGGCTGCGTCTTCATGGTCTGCCGACAGCCTCAGACCAGCACCAAGGTCTCCTTCATGGTTCCCCTTCTGCCTTTTCTGCCCATTCTGAGCATATTTGTCAATATTTACCTCATGGTTCAGCTGAGTGGAGATACCTGGATACGTTTCTCCGTGTGGATGGCTGTTGGCTTCCTGATCTACTTTGGCTACGGAATGTGGCACAGTGTGGAGCGCCAGCGCAAACTCCAGGGTCctttaaacagcagcagcacccaGAAACACAACAAGACAGGCGGGGAGAAGCCGGTTGGTGTGGGTGCAGCGGGAAAAGACCAGGATAGTTTGATTTGCCCAGAAAAGACCAGCCGGTGTTAGAGTGAAAGATTCTGTGAGGTGACAGATGCATAAAAGCACCCAGCAGCTCTGCCTtgatgcacctgttcacacagCTTCACCATGTGTGCGTCAGTCACAAACACATTCTGTCTGCGATGGCAGCGTCAGTACTCTGAATCAGCGGCCACACGATGGGGAGCCGCTCCGTCACTGTGATGGATCCACATCCCGTTAGGTCCCATTGCGCTTCATGGACAGCATGGAGGCAGAATTGAAAGGACAGGTAACACACTGGAGGGTGATGATCATTTTTCTTTAACACTGAAGCAGCTGATACAAGACTGCAGCAACGCTTTTCTCTTTCATTATGGACTTTTTAGTACATGACACACATTTTGTCTTTTCTGTTAATTGTTGCATTTTAAACAGGTTTGTAcgagtgttttaaaaaaaaaagagtaaagtcTTGAAAATCTGTGTTATCCATTTAACAGTATTATTAGATTTCATTGCACCAATTATGTACTACTATTAAGAGTAATTGTCTTTGACATAAGTGTAGGATGCTGAAAAAGAACCAACATTAGTTAAAGATATGCTGCCAATCATAAAGTTGAAATATATTTTAGAGCtattttgtgcagaattgtttttatttgcataCATGTGAAATTGGGATTATATGTATAAAAACACCATCAAGACGCCGCCACATTTAGACACAATGTACAACATGTCAAATAGTTTTGTCGGCACTTAACATGTTACCACTCGGCTAATAGAAGTAGGCCATAAGTGCTGGTGGAGAATGTCAGGCTTTTGTAGGTGTTATGTAACAGATCATATCAATCTTTGCTGTACTTATTGAGGTAGCTGTAGCTGTTGTGGTGGCTTCATCCAGGAcaggtttactttttttttcttttttttttgcttgggtTTGTTTTATCTACGAACTGTTATAATCTGAATATGAAGATTGTTATTTGATACGGAACTTTACTCCAAATGTATTTTTAGTAGTAGTATCTTTCTATCAGATAACATCTTGCTGTATTTTCCTGTTTGTCTGATACGTTGTGCTATTTTGATACAGTTACAGACATGCTGTTATTATAACCTTCATGAAATGATTATCTCTTAAGCAGAGTACTTTGCCACCTAACAAGAAGCACAACAATTAATGACAAGTTAAAGGGGTTCCGCCATCCATTCCGACATACCCCCACTCCGACATTGAGgtctaattgtcggagtggcggcacttCCATTCTTTTCAAACCCACGACTCtgacaatttttgtttccattagggttagggttagggattagggttagggaatagcagcatgttggaatagcggcatgtctgaatagaagcatgtcggagtggcggcatgTCGGACTAGCAGTGTGTATCCAAGTTAAAGtattactgtatataaacaAAGGTATGTCTTGCCACATCATTTAGATGAATTGGGGCATTTATTTTAGGTTTCTTCTCTTGTGTTCAGTGTCTTTCTTCAAAGCCTGGAGTCTGTGATGCTTTATAACCGGCTTGTACTGAACTGCATGAAGATTCAGTGCTTACATTCTTTCCTCTGAGCTTTTCAGGGCCCACCCTTGTAAGGCTCAGTGAGCTCTagttaaaagtaaaaacatgtTTGCTGTACTGCCAGTTTTTACACCAATCCTACACTCgctgaacctaggggttaataacatatgtgtacagagtcaaacgttctctgggatatgttttcaagctaatcgaatgtgtctctagctttaaacaagctaccgcaaacaGGTGGTTAGCTGCTTTAtgatctatctttttaataaactgtctgtacacttacaaagttctgaatgtttcggtttacatgtagggactctcattatgctaccgttgaagtgtggtgctattttgagccttgtggTATAAAACAGCGATATACCAtttgccccgaaagctagcgttagcagctaaccaccgaTTTGCgttagcttgtttcaagctagagacacagttgattagcatgaaaacatatgcCAGAGAACGtttgactcggtacacatatgttattaacccctaggttcattttgcgttGAAATAGTCCTTTAAGCGGCCACATACTGAGGCTGTAGGATGTTGGGGATTGATGGGTtgatatgtgcagtgtggtggTTTAAATGAATGTGGAACAAATACAGAAGCTAGTCTCAGCAGGAGTAATGTAAGGTGAGGTTCTACTACACTGAACCTCTACATTAATAGTGTAGAGTCTTCCAGTGAGGTTACAGGCTATAAAGTACATAGAAGTAACCATGATGTCAGTATCATTTGTTACCAACTGCAGACTagtacaataaatgtattttccagTAA

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13864 SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138518 lncRNA downstream 14021 2709027 ~ 2711439 (-) True G102923
TU138510 lncRNA downstream 30846 2694352 ~ 2694614 (-) True G102916
TU138509 lncRNA downstream 31905 2690831 ~ 2693555 (-) True G102915
TU138508 lncRNA downstream 34897 2688009 ~ 2690563 (-) True G102914
TU138507 lncRNA downstream 38380 2686864 ~ 2687080 (-) True G102913
TU138544 lncRNA upstream 50039 2790526 ~ 2790824 (-) True G102941
TU138701 lncRNA upstream 198659 2939146 ~ 2940797 (-) True G103059
TU138709 lncRNA upstream 219884 2960371 ~ 2961386 (-) True G103067
TU138748 lncRNA upstream 381192 3121679 ~ 3125337 (-) True G103096
TU138749 lncRNA upstream 391664 3132151 ~ 3191381 (-) True G103097
XM_039812580.1 mRNA downstream 5433 2714174 ~ 2720027 (-) True pdgfrl
XM_039812799.1 mRNA downstream 52257 2664227 ~ 2673203 (-) True polr1d
XM_039812651.1 mRNA downstream 134841 2587617 ~ 2590619 (-) True LOC120566298
XM_039814458.1 mRNA downstream 150171 2567904 ~ 2575289 (-) True lpar4
XM_039813133.1 mRNA downstream 160280 2558237 ~ 2565180 (-) True p2ry10
XM_039812823.1 mRNA upstream 34918 2775405 ~ 2793673 (-) False zdhhc2
XM_039812822.1 mRNA upstream 34918 2775405 ~ 2793673 (-) True zdhhc2
XM_039812820.1 mRNA upstream 55762 2796249 ~ 2816202 (-) True micu3b
XM_039812821.1 mRNA upstream 55762 2796249 ~ 2816201 (-) False micu3b
XM_039814051.1 mRNA upstream 102600 2843087 ~ 2844699 (-) True her11
XR_005640447.1 other downstream 527543 2181043 ~ 2197917 (-) True sh2d1aa
TU137926 other downstream 1883914 838961 ~ 841546 (-) False insb
TU137703 other downstream 2494016 220592 ~ 231444 (-) True G102276
XR_005640435.1 other upstream 151932 2892419 ~ 2898545 (-) False pabir2
XR_005640589.1 other upstream 155684 2896171 ~ 2896313 (-) True LOC120567496
TU138946 other upstream 1162504 3902991 ~ 3925309 (-) True G103268
TU138957 other upstream 1188567 3929054 ~ 3933202 (-) False smim19
TU139113 other upstream 1580222 4320709 ~ 4399990 (-) False LOC120567378

Expression Profile