RNA id: TU138955



Basic Information


Item Value
RNA id TU138955
length 209
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G103277
representative True

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 3925943 ~ 3926151 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


taatggacagagctcgtgtgacgtcacccgttggtttgtggagatctgctaggAGTCGTTGAGTTCtatgttacgttacacactttcactggcaatcacatcatagccacaccctaaaacaccccccgctttatcgccgattttaaaatcaatgagaccataattcaaaaaaatgaataagacttaaaaaaataagacttaaaactagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138953 lncRNA downstream 6474 3918925 ~ 3919469 (-) True G103275
TU138927 lncRNA downstream 65103 3860518 ~ 3860840 (-) True G103253
TU138926 lncRNA downstream 67550 3858029 ~ 3858393 (-) True G103252
TU138925 lncRNA downstream 69978 3850490 ~ 3855965 (-) True G103251
XR_005640465.1 lncRNA downstream 247177 3678338 ~ 3678766 (-) False LOC120566784
TU139023 lncRNA upstream 45714 3971865 ~ 3976121 (-) True G103336
TU139024 lncRNA upstream 54320 3980471 ~ 3980991 (-) True G103337
TU139029 lncRNA upstream 57709 3983860 ~ 3985470 (-) True G103341
TU139058 lncRNA upstream 240704 4166855 ~ 4167775 (-) True G103365
TU139059 lncRNA upstream 241658 4167809 ~ 4168075 (-) True G103366
XM_039813445.1 mRNA downstream 24453 3893627 ~ 3901490 (-) False gpr137
XM_039813446.1 mRNA downstream 24563 3893627 ~ 3901380 (-) True gpr137
XM_039813424.1 mRNA downstream 135892 3752237 ~ 3790051 (-) False gabra4
XM_039813425.1 mRNA downstream 135892 3752237 ~ 3790051 (-) False gabra4
XM_039813423.1 mRNA downstream 135892 3752237 ~ 3790051 (-) True gabra4
XM_039813447.1 mRNA upstream 2779 3928930 ~ 3933220 (-) True smim19
XM_039813448.1 mRNA upstream 11089 3937240 ~ 3946524 (-) True fam199x
XM_039813451.1 mRNA upstream 65042 3991193 ~ 4067303 (-) False zgc:66433
XM_039813452.1 mRNA upstream 65042 3991193 ~ 4054306 (-) True zgc:66433
XM_039813453.1 mRNA upstream 144265 4070416 ~ 4089964 (-) True dcps
TU138946 other downstream 634 3902991 ~ 3925309 (-) True G103268
XR_005640435.1 other downstream 1027398 2892419 ~ 2898545 (-) False pabir2
XR_005640589.1 other downstream 1029630 2896171 ~ 2896313 (-) True LOC120567496
XR_005640447.1 other downstream 1728026 2181043 ~ 2197917 (-) True sh2d1aa
TU137926 other downstream 3084397 838961 ~ 841546 (-) False insb
TU138957 other upstream 2903 3929054 ~ 3933202 (-) False smim19
TU139113 other upstream 394558 4320709 ~ 4399990 (-) False LOC120567378
TU139115 other upstream 500617 4426768 ~ 4440883 (-) False fmr1
TU139116 other upstream 500617 4426768 ~ 4439745 (-) False fmr1
XR_005640409.1 other upstream 628079 4554230 ~ 4575676 (-) True myot

Expression Profile