RNA id: TU139460


Basic Information

Item Value
RNA id TU139460
length 710
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G103694
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 6089062 ~ 6109745 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGATGACAGTGAAAAACAGTCAGAGCAAGACCGTAGTCAAAAGTTCTTCCATATAATTTTAACTATAAAACATTCAAAAGGATTTCATTCAGGTTGTAAACCATGTTACTTAGAAATGTATAATTGAACCCTACTTtagtattattataataatttaagAACGATTTCTTCAACTATTCTCTTCCCTTCATGTTcccataataaataaattaaaacagtGACACAGTTTCCGTATGTCCTGACTGTTCATTAGTACCTGAATGCCCCGTTTCCAGCTAGCTTTGTTTAGATTATCTTTAATATGGCTCACTCTGCTGGTTTCTCAGGGTCCTAATAGGACCCAAACTTATTATTGAAAAGATTTAAGGACCCATCTGAAACAATCCCAATATCCATTGTGGATTTCAACTTTCTACCGCAAAAAAACCAACAACCTCAAGAAACAAATCATATAAAATCACgtcacaaagacagaaaaaatcTCATCAAAGACCTGAAATGTTTAAGTTGTAGTGTGCAGCTTACAAAGTGATTAATATGGCTTTTAATCCAAACTTAACCTTCAATGGGATCTTCCTCTATCGTTGAAGTTaaaagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgaatgaCGGGCTGGGTGTGTTTGATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139409 lncRNA downstream 67348 6010768 ~ 6021714 (-) True G103661
TU139404 lncRNA downstream 87064 6000089 ~ 6001998 (-) True G103657
TU139366 lncRNA downstream 193904 5894819 ~ 5895158 (-) True G103621
TU139363 lncRNA downstream 200978 5887551 ~ 5888084 (-) True G103618
TU139356 lncRNA downstream 223602 5864980 ~ 5865460 (-) True G103612
TU139481 lncRNA upstream 35801 6145546 ~ 6169247 (-) True G103712
TU139508 lncRNA upstream 148966 6258711 ~ 6259004 (-) True G103731
TU139510 lncRNA upstream 206985 6316730 ~ 6317013 (-) True G103733
XR_005640530.1 lncRNA upstream 278404 6388149 ~ 6390318 (-) True LOC120567181
TU139514 lncRNA upstream 332583 6442328 ~ 6442705 (-) True G103737
XM_039813217.1 mRNA downstream 114578 5956064 ~ 5974484 (-) False ptcd3
XM_039813216.1 mRNA downstream 114578 5956064 ~ 5974484 (-) True ptcd3
XM_039813829.1 mRNA downstream 142512 5920351 ~ 5946550 (-) True LOC120567040
XM_039814366.1 mRNA upstream 1001503 7111248 ~ 7112332 (-) True LOC120567409
XM_039814351.1 mRNA upstream 1002950 7112695 ~ 7113960 (-) True LOC120567393
XM_039813713.1 mRNA upstream 1878586 7988331 ~ 7995944 (-) True slitrk4
XM_039813714.1 mRNA upstream 1973537 8083282 ~ 8084324 (-) True LOC120566969
XM_039814336.1 mRNA upstream 2631708 8741453 ~ 8748877 (-) True LOC120567368
TU139134 other downstream 1502978 4575782 ~ 4586084 (-) True G103434
XR_005640409.1 other downstream 1513386 4554230 ~ 4575676 (-) True myot
TU139115 other downstream 1648179 4426768 ~ 4440883 (-) False fmr1
TU139116 other downstream 1649317 4426768 ~ 4439745 (-) False fmr1
TU139113 other downstream 1689072 4320709 ~ 4399990 (-) False LOC120567378
TU139551 other upstream 647061 6756806 ~ 6759568 (-) False LOC120566343
unassigned_transcript_455 other upstream 1012308 7122053 ~ 7122125 (-) True trnam-cau_10
unassigned_transcript_456 other upstream 1013858 7123603 ~ 7123675 (-) True trnam-cau_11
unassigned_transcript_457 other upstream 1023087 7132832 ~ 7132904 (-) True trnam-cau_12
unassigned_transcript_458 other upstream 1024632 7134377 ~ 7134449 (-) True trnam-cau_13

Expression Profile