RNA id: XR_005640547.1


Basic Information

Item Value
RNA id XR_005640547.1
length 1904
RNA type transcript
GC content 0.49
exon number 6
gene id LOC120567361
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 9167290 ~ 9177633 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggttattggctgcatgtaaacgtagtcagtgacgGGCACATCATACAAAAAGGGCATGTTTATTTTGCTGGGGAAAACTGAAGAAGAGTTGGAGGTTGGCAAGATAGAGCTGGTCATTGTGCACCACGGCTCTGTGTCCTTTGTCTCagaaaaatattgttttgttaaGTTGAGGGACATTGGGGTCTacagtgttttggggacacccCAAGAGCAGTTTGTTTGCGTGAGGCATGATGATCTACTGGATTATTATCCATTGCCATCCTACACAATGTGTGATATTACAATGATCTGTCTCCATCACTCCTTTGCAGAGACATGTCTGCAGGACAGGAGGAGCTCAGGAGGGCTGTCTTGGCAGTACTTCCGGACCTACCTACTTCCGAACTACCTTGATGGCAGGCCTGGAGGAACTTGGTGTAGAGAACAAGGAGGACATGAGCCTTCTAAGTGAAGAGAATCTTCTGCCCTTTCTCCGTGTGGTCCAGTCTAGAAAGCTCCTCCGTGCCTTTTCATCTCAAGGTTACTTCTCAGCCCTGTCTCCTCCTGGCTCTCCACAACTCTCCTCAACCCTGTCCCCCGCGGGAAGTCCACAACTCTCCTCACCTGAGACACCCCGAACGTCCAACCCAATAGCTCTTCCCTCACCACGCACACCATGGCCTGTACATTTTAAGGTTAACTGGGAAAAGATGACGTCAGAGATCCAGTCAGCCATCGCAAATTCTACTAGACCAAATCCAGCCGCCAGAAGAGCGATGGTCAGAGAGCTTGTCGATCAAATGAGGGTGCACAATGCGAATCCAAATAGAGGGATCTGTTTGAAAGTTGTAAACGATATAATACAGAAGTACCCCACATGTTTTGGGGATGTGGATGATGGTGAAAATACAGCTGGAGCATCGCTCGTCCAGCAAGTAAAAACCAGAATTGAGCACGTCAACCGAAACAACACATTGGCACGGTTAAGAAAGAATAAGCACAGCAATCCCCAGGCGAGGACAAATGGAAGAGGTCCTGTTGATCAGTATGGATGTGTCCGATGGGCACCTCAAGAACTCCCCTCAGGGGAGACTGAAGAAACCCTACAAGAGATGAAGACTCAGATGCAGCAGCTATATGCCCAGGAAGGAATGTCAGGCGTGGAGAGAGGAGCGCTTCAGAGATGGCTTCAGAGAACCTATATTCTCCAGCGTTGTGATCTCAATGCTGACCCTCCACACAGCGTCTCAAAAATGAAGGACGACTGGCCCTTTCTCTTCTCCTTGAAGGGCCTGTTCTTGCATTTCAGTGAGCTGACCGGAATTCCTATCCAGGAGAAGCTGCCAGCCACTATAGACAACAGGAGTCAGAACATCATGGAGTACTTCAAACAGCAGAAGACACCAGGGGTGGGGAAGGTTCTGGAAGCCTACAATGAAGAGAGTGGCAACAAAGCTGTCTGCACCATCATGTGCCTGCTTGCTCACTTTAAAGAGGAGGATGGTATCTTCCTTACGGCTGATGAGAGATACTGCGCGGCGCAGACACATGGATTATGTCCATGGAAGGAGCATGTGTGATGGGGCCCCACAGCAACCTCCTGCATGGATTGGCAGCACTCTTCGCTGCCTACTACGTCTTCAACTTGCAATATCCGGCAGAAGCCGCAAGCACACTTGAGTTCATCCAGAGgtggaggaggtgaaaagGCTACGCAGGGGAGGCCCAGTCCACAGAGGGATATTGAATCACATTGATTCTTCACATCCCAGAGACTTCCAGGgtttagagattcccagttcaggaTCGAGACTCTGAACGTAGATGGATTTCCCTTGATTCATTCTTCATGGTGGAAGGACAAacggaaaccaaactcatatgggccccaatgttgaacatctctgaactcttgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139916 lncRNA downstream 26099 9140823 ~ 9141191 (-) True G104116
TU139890 lncRNA downstream 122128 9017936 ~ 9045162 (-) True G104093
TU139882 lncRNA downstream 203708 8956344 ~ 8963582 (-) True G104086
TU139867 lncRNA downstream 228914 8938139 ~ 8938376 (-) True G104072
TU139852 lncRNA downstream 280298 8886401 ~ 8886992 (-) True G104059
XR_005640556.1 lncRNA upstream 8448 9185910 ~ 9201784 (-) False LOC120567371
XR_005640557.1 lncRNA upstream 8448 9185910 ~ 9201784 (-) True LOC120567371
TU139944 lncRNA upstream 23659 9201121 ~ 9201729 (-) False LOC120567371
TU140032 lncRNA upstream 105623 9283085 ~ 9284265 (-) True G104213
TU140031 lncRNA upstream 175865 9353327 ~ 9353733 (-) True G104212
XM_039814336.1 mRNA downstream 418413 8741453 ~ 8748877 (-) True LOC120567368
XM_039813714.1 mRNA downstream 1082966 8083282 ~ 8084324 (-) True LOC120566969
XM_039813713.1 mRNA downstream 1171346 7988331 ~ 7995944 (-) True slitrk4
XM_039814351.1 mRNA downstream 2053330 7112695 ~ 7113960 (-) True LOC120567393
XM_039814366.1 mRNA downstream 2054958 7111248 ~ 7112332 (-) True LOC120567409
XM_039814332.1 mRNA upstream 101689 9279151 ~ 9306056 (-) False atoh8
XM_039814331.1 mRNA upstream 101689 9279151 ~ 9306053 (-) True atoh8
XM_039814317.1 mRNA upstream 130309 9307771 ~ 9353105 (-) False rnf103
XM_039814316.1 mRNA upstream 130309 9307771 ~ 9353105 (-) False rnf103
XM_039814315.1 mRNA upstream 130309 9307771 ~ 9353105 (-) True rnf103
TU139588 other downstream 1880318 7286459 ~ 7286972 (-) True G103806
unassigned_transcript_462 other downstream 2025882 7141336 ~ 7141408 (-) True trnam-cau_17
unassigned_transcript_461 other downstream 2027548 7139670 ~ 7139742 (-) True trnam-cau_16
unassigned_transcript_460 other downstream 2029118 7138100 ~ 7138172 (-) True trnam-cau_15
unassigned_transcript_459 other downstream 2030918 7136300 ~ 7136372 (-) True trnam-cau_14
XR_005640546.1 other upstream 179815 9357277 ~ 9457863 (-) False abhd18
TU140040 other upstream 387340 9564802 ~ 9569896 (-) False LOC120566283
TU140082 other upstream 460534 9637996 ~ 9638596 (-) True G104258
TU140100 other upstream 465090 9642552 ~ 9667951 (-) False LOC120566907
TU140484 other upstream 2787517 11964979 ~ 11992678 (-) True G104610

Expression Profile