RNA id: TU139944


Basic Information

Item Value
RNA id TU139944
length 293
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC120567371
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 9185910 ~ 9201784 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCTTTGTTTCTGCCGTGAATTACACAGCGTGTCTACTGCTTGGCTACTTGGTTGCTGGACTTTGGACTACAGTTGGCTTGCATGTGgctgcaggctggtggtggtgttggtgatGTGGGTGGTGGTGGTCTTCCTTCTTGTGTgccatgtttccttggatttgGTGACATCACTGTGTGTCTGGGTGAAccctttttctttaatttagttttattaatTCTCCTTCCCCTTCACCTGCTCTTCCCACCAGTAGGCCTCAGCCCCTGAttaggtttttctttttcttatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139925 lncRNA downstream 23488 9177366 ~ 9177633 (-) False LOC120567361
TU139916 lncRNA downstream 59930 9140823 ~ 9141191 (-) True G104116
TU139890 lncRNA downstream 155959 9017936 ~ 9045162 (-) True G104093
TU139882 lncRNA downstream 237539 8956344 ~ 8963582 (-) True G104086
TU139867 lncRNA downstream 262745 8938139 ~ 8938376 (-) True G104072
TU140032 lncRNA upstream 81356 9283085 ~ 9284265 (-) True G104213
TU140031 lncRNA upstream 151598 9353327 ~ 9353733 (-) True G104212
TU140033 lncRNA upstream 152344 9354073 ~ 9354367 (-) True G104214
TU140034 lncRNA upstream 152664 9354393 ~ 9355311 (-) True G104215
TU140030 lncRNA upstream 153983 9355712 ~ 9357586 (-) False abhd18
XM_039814323.1 mRNA downstream 23659 9171427 ~ 9177462 (-) True LOC120567361
XM_039814336.1 mRNA downstream 452244 8741453 ~ 8748877 (-) True LOC120567368
XM_039813714.1 mRNA downstream 1116797 8083282 ~ 8084324 (-) True LOC120566969
XM_039813713.1 mRNA downstream 1205177 7988331 ~ 7995944 (-) True slitrk4
XM_039814351.1 mRNA downstream 2087161 7112695 ~ 7113960 (-) True LOC120567393
XM_039814332.1 mRNA upstream 77422 9279151 ~ 9306056 (-) False atoh8
XM_039814331.1 mRNA upstream 77422 9279151 ~ 9306053 (-) True atoh8
XM_039814317.1 mRNA upstream 106042 9307771 ~ 9353105 (-) False rnf103
XM_039814316.1 mRNA upstream 106042 9307771 ~ 9353105 (-) False rnf103
XM_039814315.1 mRNA upstream 106042 9307771 ~ 9353105 (-) True rnf103
XR_005640547.1 other downstream 23659 9167290 ~ 9177462 (-) False LOC120567361
TU139588 other downstream 1914149 7286459 ~ 7286972 (-) True G103806
unassigned_transcript_462 other downstream 2059713 7141336 ~ 7141408 (-) True trnam-cau_17
unassigned_transcript_461 other downstream 2061379 7139670 ~ 7139742 (-) True trnam-cau_16
unassigned_transcript_460 other downstream 2062949 7138100 ~ 7138172 (-) True trnam-cau_15
XR_005640546.1 other upstream 155548 9357277 ~ 9457863 (-) False abhd18
TU140040 other upstream 363073 9564802 ~ 9569896 (-) False LOC120566283
TU140082 other upstream 436267 9637996 ~ 9638596 (-) True G104258
TU140100 other upstream 440823 9642552 ~ 9667951 (-) False LOC120566907
TU140484 other upstream 2763250 11964979 ~ 11992678 (-) True G104610

Expression Profile