RNA id: TU140432


Basic Information

Item Value
RNA id TU140432
length 1960
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G104571
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 11895623 ~ 11897674 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaggaaaagtgTCGGGTTTcgaaacatacatgtatttgtgCTTTGCCAATAAAAAAAGTATAGCTTACACCATTCCAACCTGTTACATGTATCAAAAGAAGGCAACATCAGCATTATTTACTGTATGATCAGTTTAAAAGTGCACTTCTGTGATATTTAAAATGATTGATTCTGATCTGGAAATGCAggggttaaaggtcccatggcatgaaaggttttttaacattaataggagttcccccagcctgcctatggtcccccagtggctagaaatggtgataggtgtaaaccgagccttgggtatcctgctctgcctttgagaaaatgaaagctcagatgggctgatctggaatcttccctttatgaggtcataaggagcaaggttacctcccctttctctgctttgcccgcccagagaatttggccaaacCCATGAGATAGAgacacatcatggcttgcaaacaagcgaagcatggcagttggtcaaggccacaccccccccctacaccttgccccccccccccgtctctcctcctccatagtatttaaagctacagacacagaattggcacatcctaaggaaaactcattgtgggactagctctagtggctgtaattctgagaagagacttcagatacagtattaggggaccactaaggtctatataaaagcatccaaaaagcaccatgtcataggacctttaaaattgTACACAATCGAAAATTAGATCTTGGAACAAAAATGGCAAGAGAAGAGGTTTACATTCAACAGTTCAAGGTTACAAAACACAGAAATCAGTAATGCTTTATTTTATGGGGGTCTGTATCATTTATCTGTACCATTTCCTAGGAAGTTTCCCGGAAAGAACCATGTAGTTTGGAAATACTTAAATTGTTCACTGTAAGAGCCAATTAGTGTCCTTGGTATAAATAGGAACCAATCTTTGGTTCCTCGGGTGCAACCCAGAAGCACATACAGGTTTTGACCACACGCACACCAACACCACAACACTACACAGGCATACATACAAGCAGTAATTTGTGTGGAAACCTATGAAGATATCATGGAAATAAATGGAACCAAAGGTTTTAACTGCAAATATGATTTGGACTTTCGTTgatcaaaaaggtaaaaagtgcGTCAATTACTCTACCCGTGGAACAGCACCTCAGGGGCTTAAAGCTTGGGCTCAGCCTCTACATTCACTACCAATTAATTGATTGTGTAACCTAAACAGTTTAGTCTGAGAACAGCAGGTCAGCTGGACATAAATGTGAAATGTGTCTAAAGGCAAGCATACAgtgtaacatactgtatatagagaACAATGTTTCCAATGATCTATTAATAATGAATAGGTTGAGTTTAAATGGAGCAGTTCTTTTCAAGAACATTCCTATTTTCCCTGTAGTTAGTTTCAAATGAGCTAGTTCTTTCCAGGAAACTTTGTAGAAACGTATTAGAAAATGATTAGGATTGTGCCCTTTAACCCAGAAATCAGTACCAGCCTTATTGGCCAAATATGTGAACACATACAAGAAATTTGACCCTGGTATATATCGGTGATATACCATGTGATAAACGGTAAAGCACCAGAAACCCTGAATACTTGCATCACTGAATACAACTCCTGCTGACATGTTATAGctctaacttttcatctttcacCATGATTGACAACAAATGAAAATTGAGAGAAATtgcagaagaaaacaaaaccacAGGCAAAACTGAAAATGCTCAGACATCGGTCTGCCTAGTGCCATAGTGCAAGCAGTACTCCTATCGCACTCATACAGCAGAGGGTTGTGGGCAGAGATGGATCATCAGAACTATTCAGTAAGTACTCCACCCGAGACCAGGACCCATTATTGGGCAAAGGTTTCACTCCCAACGTCCAGCACATGAGGTTATAGATGTCCACCGATCGAATTGGAGCAGCCTGAACATTCCGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140420 lncRNA downstream 36586 11849735 ~ 11859037 (-) True G104564
TU140421 lncRNA downstream 36586 11852445 ~ 11859037 (-) False G104564
TU140412 lncRNA downstream 45901 11849302 ~ 11849722 (-) True G104562
TU140410 lncRNA downstream 53017 11840556 ~ 11842606 (-) True G104560
TU140378 lncRNA downstream 176477 11718788 ~ 11719146 (-) True G104530
TU140475 lncRNA upstream 48086 11945760 ~ 11951049 (-) True G104604
TU140548 lncRNA upstream 270159 12167833 ~ 12168153 (-) True G104659
TU140553 lncRNA upstream 375578 12273252 ~ 12274308 (-) True G104664
TU140641 lncRNA upstream 892794 12790468 ~ 12790707 (-) True G104733
TU140645 lncRNA upstream 1034972 12932646 ~ 12932852 (-) True G104737
XM_039814175.1 mRNA downstream 135866 11726952 ~ 11759757 (-) True csnk1a1
XM_039814176.1 mRNA downstream 135866 11737043 ~ 11759757 (-) False csnk1a1
XM_039814177.1 mRNA downstream 135867 11726952 ~ 11759756 (-) False csnk1a1
XM_039814178.1 mRNA downstream 135872 11726952 ~ 11759751 (-) False csnk1a1
XM_039813041.1 mRNA downstream 683126 11210995 ~ 11212497 (-) True LOC120566514
XM_039814277.1 mRNA upstream 2985 11900659 ~ 11927204 (-) False ccdc142
XM_039814275.1 mRNA upstream 2985 11900659 ~ 11927188 (-) False ccdc142
XM_039814280.1 mRNA upstream 2985 11900659 ~ 11927188 (-) False ccdc142
XM_039814276.1 mRNA upstream 2985 11900659 ~ 11927188 (-) False ccdc142
XM_039814274.1 mRNA upstream 2985 11900659 ~ 11927188 (-) False ccdc142
TU140100 other downstream 2227672 9642552 ~ 9667951 (-) False LOC120566907
TU140082 other downstream 2257027 9637996 ~ 9638596 (-) True G104258
TU140040 other downstream 2325727 9564802 ~ 9569896 (-) False LOC120566283
XR_005640546.1 other downstream 2437760 9357277 ~ 9457863 (-) False abhd18
XR_005640547.1 other downstream 2718161 9167290 ~ 9177462 (-) False LOC120567361
TU140484 other upstream 67305 11964979 ~ 11992678 (-) True G104610
TU140545 other upstream 245026 12142700 ~ 12143744 (-) True G104656
TU140757 other upstream 2252818 14150492 ~ 14256041 (-) True G104837
TU140857 other upstream 2639427 14537101 ~ 14538469 (-) False uvssa
unassigned_transcript_470 other upstream 2806358 14704032 ~ 14704103 (-) True trnaa-ugc_8

Expression Profile