RNA id: TU140548


Basic Information

Item Value
RNA id TU140548
length 321
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G104659
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 12167833 ~ 12168153 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACGTATTGtacattaaaaatattgaatcaacatAGCTGTGCAATttcatcaaacataggactactgagtcacatttttcggtatgtatcaacgttgtgtgtgtgtagtctatgctgtgtgccctcctcaagaggcgagagagagacccaaatgtatctatatatttttaaaacctgctaaaccatgtttaagcgaccttttatcaatgtattggtcagtgctacccaatcatagcatactgtactggtggggaaatacgccagcatctgataaaaagaagtcagccagccagctgctccctgacaagagccactctccg

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140475 lncRNA downstream 216784 11945760 ~ 11951049 (-) True G104604
TU140432 lncRNA downstream 270159 11895623 ~ 11897674 (-) True G104571
TU140420 lncRNA downstream 308796 11849735 ~ 11859037 (-) True G104564
TU140421 lncRNA downstream 308796 11852445 ~ 11859037 (-) False G104564
TU140412 lncRNA downstream 318111 11849302 ~ 11849722 (-) True G104562
TU140553 lncRNA upstream 105099 12273252 ~ 12274308 (-) True G104664
TU140641 lncRNA upstream 622315 12790468 ~ 12790707 (-) True G104733
TU140645 lncRNA upstream 764493 12932646 ~ 12932852 (-) True G104737
TU140657 lncRNA upstream 937462 13105615 ~ 13105883 (-) True G104749
TU140665 lncRNA upstream 1080261 13248414 ~ 13248649 (-) True G104757
XM_039813780.1 mRNA downstream 78928 12073595 ~ 12088905 (-) True nocta
XM_039813781.1 mRNA downstream 85220 12073595 ~ 12082613 (-) False nocta
XM_039813568.1 mRNA downstream 170590 11970243 ~ 11997243 (-) True LOC120566888
XM_039814277.1 mRNA downstream 240629 11900659 ~ 11927204 (-) False ccdc142
XM_039814275.1 mRNA downstream 240645 11900659 ~ 11927188 (-) False ccdc142
XM_039812585.1 mRNA upstream 583042 12751195 ~ 12760002 (-) False LOC120566266
XM_039812583.1 mRNA upstream 583042 12751195 ~ 12760002 (-) False LOC120566266
XM_039812584.1 mRNA upstream 583042 12751195 ~ 12760002 (-) False LOC120566266
XM_039812581.1 mRNA upstream 583042 12751195 ~ 12760002 (-) False LOC120566266
XM_039812582.1 mRNA upstream 583042 12751195 ~ 12760002 (-) True LOC120566266
TU140545 other downstream 24089 12142700 ~ 12143744 (-) True G104656
TU140484 other downstream 175155 11964979 ~ 11992678 (-) True G104610
TU140100 other downstream 2499882 9642552 ~ 9667951 (-) False LOC120566907
TU140082 other downstream 2529237 9637996 ~ 9638596 (-) True G104258
TU140040 other downstream 2597937 9564802 ~ 9569896 (-) False LOC120566283
TU140757 other upstream 1982339 14150492 ~ 14256041 (-) True G104837
TU140857 other upstream 2368948 14537101 ~ 14538469 (-) False uvssa
unassigned_transcript_470 other upstream 2535879 14704032 ~ 14704103 (-) True trnaa-ugc_8
TU140912 other upstream 2567138 14735291 ~ 14739480 (-) False LOC120567441
XR_005640448.1 other upstream 2921251 15089404 ~ 15107034 (-) False rnf44

Expression Profile