RNA id: TU140645


Basic Information

Item Value
RNA id TU140645
length 207
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G104737
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 12932646 ~ 12932852 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attttttgtctcagtgcaagtaattaggtagtttttttgtcttttgttggctcacttttactcacaacatgctaaccggcaacataggattccattcactacgctaagctaactagcggcggcgctgccggtgttgcaccggactaaaacaatgcatgcacaaaaaatgcgttggcccacctatctacagctaggggagaccgttat

Function

GO: NA

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140641 lncRNA downstream 141939 12790468 ~ 12790707 (-) True G104733
TU140553 lncRNA downstream 658338 12273252 ~ 12274308 (-) True G104664
TU140548 lncRNA downstream 764493 12167833 ~ 12168153 (-) True G104659
TU140475 lncRNA downstream 981597 11945760 ~ 11951049 (-) True G104604
TU140432 lncRNA downstream 1034972 11895623 ~ 11897674 (-) True G104571
TU140657 lncRNA upstream 172763 13105615 ~ 13105883 (-) True G104749
TU140665 lncRNA upstream 315562 13248414 ~ 13248649 (-) True G104757
TU140671 lncRNA upstream 456095 13388947 ~ 13389163 (-) True G104763
TU140680 lncRNA upstream 636671 13569523 ~ 13569734 (-) True G104772
TU140681 lncRNA upstream 723957 13656809 ~ 13657037 (-) True G104773
XM_039812585.1 mRNA downstream 172644 12751195 ~ 12760002 (-) False LOC120566266
XM_039814212.1 mRNA upstream 808317 13741169 ~ 13766184 (-) False pcdh10b
XM_039814213.1 mRNA upstream 808317 13741169 ~ 13766184 (-) False pcdh10b
XM_039814211.1 mRNA upstream 808317 13741169 ~ 13766184 (-) True pcdh10b
XM_039813658.1 mRNA upstream 1165217 14098069 ~ 14119395 (-) True mlsl
XM_039813660.1 mRNA upstream 1165679 14098531 ~ 14119395 (-) False mlsl
TU140545 other downstream 788902 12142700 ~ 12143744 (-) True G104656
TU140484 other downstream 939968 11964979 ~ 11992678 (-) True G104610
TU140100 other downstream 3264695 9642552 ~ 9667951 (-) False LOC120566907
TU140082 other downstream 3294050 9637996 ~ 9638596 (-) True G104258
TU140040 other downstream 3362750 9564802 ~ 9569896 (-) False LOC120566283
TU140757 other upstream 1217640 14150492 ~ 14256041 (-) True G104837
TU140857 other upstream 1604249 14537101 ~ 14538469 (-) False uvssa
unassigned_transcript_470 other upstream 1771180 14704032 ~ 14704103 (-) True trnaa-ugc_8
TU140912 other upstream 1802439 14735291 ~ 14739480 (-) False LOC120567441
XR_005640448.1 other upstream 2156552 15089404 ~ 15107034 (-) False rnf44

Expression Profile