RNA id: TU141330


Basic Information

Item Value
RNA id TU141330
length 2210
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G105253
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15902369 ~ 15904937 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGATGTGGATGCACTCCATGGATGAGGGGAAAAGTGCTGTCTGCTGAATGAGGGTGTGCCAACTCCTGTATGACCGTGCAGATACACAGGGCTGCCAGTGATACTAGTGGCATAGCTGGTCAACCGATGGGGCTGTTGACCATCCTCTGTGAGGCAGAGCGGTAGCCAGGGGCTTTGGAGCTGTCTGGAGGAGGTGGGGGCATCATATTCTCCATTTGGCCCATGTAGGCTGGTGGGGCCGAGTATGACTGCTCTGGAGCCGATCGAGTCGGCAGATGGCATGCACCCCACACCTGATTGTTTCCAACCTGCAAGGCGAGCACAATTGATGACAAAGTAGTAACTATTGAGTGTGGTATTATTGATCTTATGTAACAGCAAGGATCTCATGACATGTGTACCGTTTAGTTTATTCAGCCATTTAAACTCCTTCTGTATCATTTAAAGTCTCTAGATAAGAACAGCTAAAAGTAAAACAAGATGTCAGGGTAATGTTTACATTATAAATGTTACTTTAACTCACCTGGTTATTGTTATCAAAGATGCTGCTGAAGTTGAAGAGGCCTGCAGGACCAAAGTTGGGGGGGATCTGCTGAGGCTTGCCTGCATTGGCCACATGCTGCATCTGGGAACCGTTCATCATCCCCAGGTTAGAGACCTGAAGGGAGCCTTGAGCCTGGGCTTGAGCTTGGTTCTGGGCTTGTGGAGGCAAAGTTGTCGACTGGGACGTTTGGTTTTGGGTCTGCTTCGGGGGTTCTTGCTGAGCATTGAAGGGCACAAACACagattgttgctgctgctgctgcggttgTTGCTCAGGAAGCGAATAGTAAGGCCCTGGTGGCTGCATACGATGGGAGACTCTGGGCGCAGGGGCTGAGAAGTGGGGTACAGTGTTGTTGGGGTGTGCAACATTGTGTGAGAGGACAGGAGGAGGTGCTGATGGGTGGTGGGAGCTCGGCTGTGGGTTGAGGAGGGGTGGTGGAGCCTCTGTGGATGgtacagaggagggaggaggtaaCTGCTGCCGAGGCTCTGGCTTGGGAGGTAAAGCCATGGCAGGGGCAGTGAAACCCACAGAGTTGATGCTCTCGCTGACAGAAACAGCCTGGTTTTCTGAAGATAGAGAGGGCTTCTCTTTACCAAGAGGGGCGACGGCACTGGACTCTGTTTTAGTTAGCTGGATGGGGGGCTGTGAGATAGGTCCGACTGACTGCGGGGGGGGCGGTAGTTGTAGTGGAACTGTGATGTGCAGGAGAACCAGTGCCTCGTACTGCATTGCCGCCACTAGTTGAAGTAGCCACAACAGACACGGGGATGACACCAGCAGGCTTTGGGTCAGGGGCGAAGAGCTGTTTCCTGACAGAGGAAGGAGTGGGGATGCTCGGCTGGGGATTGTATGGAGTAGGATTAGGGGTATGAGGCGAGGCCGTAGATGTGTTAGGTGCACTGGTGGTGGCGGTGGTCGTGACTGAGGCTCCTGAGCTGGCTGAGTTGCTGTGCTCATTATGGGTCGAGTTGGCTCTGGCCTGGCCTCCAGTGCCGTTGGTTCCTCCATTGTGCTTGGGGGAGCTGTTGGCACTGCCGGGACTCACAGGACGCACGGGGAAGGATCCCCAGGTGCTGGCGGCGGGAGCGAAGGTGCCACCAAACTGGGCCATGGGTAGACGAGGGTGTCTGATCTGGTGCATGGTCTGAGCAGCTAGTAGAGCCAGCTGAGGGTGGGCGTACGCCAAGGGCAGAGACACAGGGaagggctgtctgacatttGATGACAGTCCCTTCCCAATCTTTCCCCCGGCCTGAGAGGAGGGTGAAGACGAGGATGAAGAGGGCTGGAACGAGACGCCTGTGGAGACCAACGAGCTCAGGGATTTCGGCCCAGTGGTTGAACCGCTGGTGGGCCCTGTGGTACTGGGGAAGGAAGCTGGGGTCATTTTAGAGCCTGGGGCTCGGATGTGATTCCTGGGGATCAGATCTTCAAGCTCTTTGGCTGGGTCTTGGATTAGAGCATTGATCAGCTGGACAGCATACCTTGTAGACTCTGTCCCTCCTCTGAAACAACCAAGCACACTTCATTCAGACTATGTTCTTGTGTTAAAAAGTATAACTTATCAAATTCAGCCTGATCTTTTTCGGGCCTCAGTTTTGAGTATTTTGCACAACATAGTTAATGTCATTCAATTAACCAAAACACTGTTTATCCAAC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141324 lncRNA downstream 5637 15896257 ~ 15896732 (-) True G105247
TU141318 lncRNA downstream 10119 15890157 ~ 15892250 (-) True G105243
TU141314 lncRNA downstream 13301 15880363 ~ 15889068 (-) True G105241
TU141313 lncRNA downstream 34514 15866067 ~ 15867855 (-) False hnrnph1
TU141297 lncRNA downstream 73878 15828291 ~ 15828491 (-) True G105230
TU141361 lncRNA upstream 23680 15928617 ~ 15958760 (-) True G105279
TU141371 lncRNA upstream 54182 15959119 ~ 15960179 (-) True G105289
TU141372 lncRNA upstream 91621 15996558 ~ 16005327 (-) False unc5a
TU141374 lncRNA upstream 150646 16055583 ~ 16056028 (-) True G105292
TU141417 lncRNA upstream 358294 16263231 ~ 16263863 (-) True G105331
XM_039812803.1 mRNA downstream 30420 15866060 ~ 15871949 (-) True hnrnph1
XM_039812802.1 mRNA downstream 48333 15850494 ~ 15854036 (-) False hbegfa
XM_039812801.1 mRNA downstream 48334 15850494 ~ 15854035 (-) True hbegfa
XM_039812950.1 mRNA downstream 110817 15783802 ~ 15791552 (-) False rmnd5b
XM_039812808.1 mRNA upstream 9943 15914880 ~ 15919202 (-) False cltb
XM_039812809.1 mRNA upstream 9943 15914880 ~ 15919202 (-) False cltb
XM_039812807.1 mRNA upstream 9943 15914880 ~ 15919202 (-) True cltb
XM_039812810.1 mRNA upstream 9943 15914880 ~ 15919201 (-) False cltb
XM_039812815.1 mRNA upstream 55260 15960197 ~ 16103794 (-) True unc5a
TU141311 other downstream 34514 15866067 ~ 15867855 (-) False hnrnph1
XR_005640446.1 other downstream 283261 15604604 ~ 15619108 (-) False tspan17
TU141106 other downstream 767633 15133530 ~ 15134736 (-) True G105086
XR_005640448.1 other downstream 795335 15089404 ~ 15107034 (-) False rnf44
TU140912 other downstream 1162889 14735291 ~ 14739480 (-) False LOC120567441
XR_005640433.1 other upstream 687971 16592908 ~ 16674855 (-) False gria3b
TU141625 other upstream 1052725 16957662 ~ 16963474 (-) False rab9b
TU141756 other upstream 1237209 17142146 ~ 17151568 (-) False tmsb1
XR_005640507.1 other upstream 1617204 17522141 ~ 17577811 (-) False nexmifb
TU142030 other upstream 1878623 17783560 ~ 17795223 (-) False LOC120567448

Expression Profile