RNA id: XM_039813028.1


Basic Information

Item Value
RNA id XM_039813028.1
length 4588
RNA type mRNA
GC content 0.45
exon number 16
gene id gria3b
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 16524356 ~ 16674855 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctcttcctctcttagttgcaaaaaaaatgttctgCAGCTGGGCTGCACCTCAATGAACCTAATTGGTGCACTGTGAGCGACCATCATCTATCCACTGGATTTCCATCGCGGCCGGCTTCCATCCAGAACATATGAATTTGCTTAGACAGACCCTTTTAAGGAGTTGAACAGATAGGTCGGAGAAAATGGCACAACGCGTGGTTTTGTTTCTACTGTGGCTCTTTGACAGATCATTCGCAGGATTTCCCAATCAGATCAATATCGGGGGGCTGTTCATGCGTTCCACGGTGCAGGAGCACAGCGCGTTCAGGTTCGCTGTCCAACTCTACAACACCAACCAAAACACCACTGAAAAGCCTTTCCACCTCAACTACAATGTCGACAACCTCGAGTCGTCCAACAGCTTTTCAGTCACCCATGCGTTTTGCTCCCAGTTCTCCCGCGGCGTGTACGCCATCTTCGGATTCTACGACAAGAAGTCCATGAACACCTTGACCTCGTTCTGCGGCGCCCTGCACACCTCCTTTGTCACACCCAGTTACCCCACCGATAATGAGGTGCAGTTTGTCATCCAGATGCGCCCCGCCCTCCGGGGTGCTGTCCTCAGCCTGCTCTCTCACTACAAGTGGCAGAAGTTTGTCTACCTCTACGACACTGACCGAGgttTCTCTATACTGCAGGCCATCATGGAGGCAGCAGTAGCTAACAACTGGCAGGTGACCGCCCGCTCTGTTAGCGGCACAACCGATGCAGCAGAGTTCAAGCGCATCATTGAGGAGATGGACAGGAGGCAGGAGAAGCGCTTTGTGATTGACTGTGAGGTGGACAGGATCAACACCATATTAGAACAGgTTGTGACTCTGGGGAAGAACAGCCGTGGTTACCACTACATTCTGGCCAATCTTGGATTTACTAACGTGAGCTTGGACAAAGTCTTCGCCGGTGGAGCCAACATTTCAGGGTTTCAGATAGTCAACCCTGAGAACCCGATTGTGCAGCAGTTTATGCAGCGCTGGGAGCGGCTAGATGAAAGAGAATTCCCAGAAGCCCGAAACACTCCTCTGAAGTACACTTCAGCTCTGACCCATGATGCCATTCTGGTGATAGCAGAGGCCTTCAGGTACCTGCGGCGCCAACGTGTGGACGTCTCTCGACGGGGCAGCGCTGGAGACTGCCTAGCCAATCCCGCTGTACCTTGGAGCCAAGGCATCGACATTGAGAGAGCTCTCAAAACGGTCCAAGTGAATGGTATGACTGGGAACATCCAGTTTGACAACTACGGCCGCAGAACCAACTACACCATAGATGTTTATGAGATGAAAACAGGTGGGCCGAGTAAGATTGGGTACTGGAACGAGTACGCACGATTTGTAAATATTATGGACCCGCAGGTCTCCAACGACTCCTCAGTGGAAAACCGAACGATTGTGGTCACTACTATTATGGAAGCTCCTTATGTGATGTACAAGAAAAATTATATGCATCTGGATGGGAATGACAGATATGAAGGCTACTGCGTCGATTTAGCATCTGAGATTGCCAAACATGTTGGAATTAAGTACAAACTGTCTATAGTAATGGATGGGAAGTACGGAGCCCGAGACCCCGAGACCAAGACGTGGAACGGGATGGTGGGTGAACTGGTCTATGGGAGAGCAGATATAGCAGTTGCACCTCTTACCATTACTCTGGTTCGAGAGGAGGTGATAGACTTTTCCAAGCCCTTTATGAGCTTGGGCATCTCCATTATGATAAAGAAGCCACAAAAGTCCAAGCCTGGCGTTTTCTCCTTCCTGGACCCGCTGGCCTATGAGATCTGGATGTGTATAGTGTTTGCCTATATTGGGGTGAGCGTGGTCCTGTTCCTGGTCAGTCGGTTCAGTCCTTATGAGTGGAACCTGGATGAACAGGACGAGACCAAAGACCCCCAGACGCCCCCCGATCCTCCCAACGACTTTGGCATCTTCAATTCCCTCTGGTTCTCACTGGGCGCCTTCATGCAGCAGGGCTGTGACATCTCCCCCAGGTCTCTGTCGGGCCGCATCGTCGGTGGTGTGTGGTGGTTCTTCACCCTCATCATCATCTCCTCCTACACAGCCAACCTGGCTGCCTTCTTGACAGTGGAGAGGATGGTCTCTCCTATAGAAAGTGCCGAAGATTTAGCCAAGCAGACAGAGATAGCATATGGCACTCTGGACTCAGGCTCCACAAAGGAGTTTTTTAGGCGATCCAAAATAGCAGTATATGAGAAGATGTGGTCATACATGAAATCCGCTGAACCCTCAGTGTTTGTTAAGACCACACCCGATGGCGTAGCCCGGGTACGAAAGTCAAAGGGCAAGTTCGCCTTTCTCCTCGAGTCCACCATGAACGAGTACATTGAGCAGCGGAAGCCCTGCGACACCATGAAAGTGGGCGGGAACCTCGACTCGAAAGGATACGGTGTGGCGACGCCCAAAGGCTCAGCATTAAGAACTCCTGTAAACCTTGCAGTATTGAAACTCAGTGAACAAGGCATCTTAGACAAGCTGAAAAACAAATGGTGGTACGATAAGGGTGAATGTGGAACCAAGGACTCTGGAAGTAAGGACAAGACAAGTGCTCTCAGCCTAAGCAATGTGGCTGGTGTCTTCTATATTCTGGTTGGAGGGCTGGGGCTGGCCATGATGGTGGCTCTGATAGAGTTCTGTTATAAATCACGGCAAGAAACCAAACGGCTGAAATTGGCCAAGAATGCCCAGAATTTTAAGCCGGCTCCCCCGACCAACACCCAGAACTTTGCCACATACAGAGAAGGCTACAACGTATACGGAACCGAGAGCGTAAAGATCTAGAGGTTTAGGAAACATTTCCATTGTCCCTTACAACTGTGACTGAACATCTATGAAAGGACAGGATCACGGGGATTGAGCTTCAAGCCAAATCCTCTCGGGCGGAAACGGCACGATTATCTGCAATGACGACACGACTGGACTGGTCACGGGAAGAGCCGATGCCGCTCCCTTCTCTTAGTGCCTTATGGAACTCCGAGTCCAATCAATGCAACTCATTCACAATGATATTGCTTTTAGCTTGAAACTCATACAAAACGGAAGAATGGTGCAGtgattgaaatatatatatatataatacattttacatgTTACAATGAATGAGAGAACTAAAGCCATCCTTTGCAACCCTAAGCACACTTTGAAGTGCCAGAAAGACAACGAATCTTATATGACAAGTCTAATTGGTTTCTTGTAATCAATATGATCAGATTACTCTTCATCCTTCTGCTGCCAGATTTTCACTGGTTATATGtgttcaaatcattttattaGATCTATTCAGTGCACTGTAAGACACTGGTTATTAGACAATAGCTTTTATACTGCTGTAAGTCACTTATAGTGGCATTGTACTTGTTTTAAAAGTCAGATTGATCTCACTGGAGCGAAATGCCATTCAGCCCAAAACAATTCCgagtgtgttgtttgtattctaaactctggtgctGCTGCCACTGTCTTCTGAACGTTTGTTGGGACTCATGAAGATGAGAAGATGATCTGGTTTGGCTTTTACGCACTACAGAACCAGGTCATAATTCGCACTTCCAATACTGCCAAGAGTGTGTTTTGTATGACAAAGAGTGTGTAAAGCAAAGTATTCATGCTTgagtcaaaaaagaaaaaaaaaatctgtttgtgATCCACAGTTTGTAAAATATCAAAGGAGCACTGACTCGCTCCAAACAGTCTTTCCCTTAAGTCTAGAGTCATTCAAGTCACCTGTACGTGAAAGTAAAACCAAACGAAAAGGGTGATTCAGTTGTAGATTAACTGCAATCCAATTAAAGGATAACAGTAATGGCTTTTAAACTGTAGTATTTTGGATTACTTTACCATTTTCTTTAACAATTGCACATTTTACAATGAGCTGTGGTTTGCTTTCAATTTGATTTGACTTTAATGAGCATTACAGTGTTTGGTGACTTCACTagtaaatgaaaatgaaaaatatatgaATACAACGGAAAATAGATTTATACAAGGTTATGCCAGGGAGACCCCTGAAGCTTAGCACATTTCCGTATTGCTGTAATCATTTCCTTTCTTTCAAAAAGACTGTGATTCCGTAGGATTTAGGAAGACAAGTTATCTAATTACCTAAAACTATGGGCAAAtagttttatataaaaaaaaaagaaactgataATGTGAAGAGAAATGGAGAACAAGTTGAGAAAGATGTGTACATTTAGATAAAGGAGAATTATTTATATTACATGATGAAAGATTGGTTTCCCTTTTTTACCTTTAGGACATTGCATGTGAAATCAGTGATGCTTGACGAGCTCTGCTACTCAAACCGAAACCTTAGGTTTACGCTAGAAATCCAGCCCAGGTTATTCTTTTGTaaatcagtctttttttttttctttcttttttttgtacacCTCACCttctgcaacaaaaaaacaaaaggcatAGTAGTGGGTACAAAAGAGCAAGAGATGCATGCATAATTTGCTGAACCTCATTAGTGAGGCGCTGTACAGagacttttaatacattttgtaaataaaatgtacagaaaGA

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG:

id description
K05199 GRIA3; glutamate receptor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141531 lncRNA downstream 82380 16466448 ~ 16506278 (-) True G105417
TU141525 lncRNA downstream 82380 16467051 ~ 16506278 (-) False G105417
XR_005640512.1 lncRNA downstream 91336 16496457 ~ 16497322 (-) True LOC120567052
TU141424 lncRNA downstream 249640 16334273 ~ 16339018 (-) True G105337
TU141418 lncRNA downstream 324239 16264201 ~ 16264419 (-) True G105332
TU141551 lncRNA upstream 12624 16687479 ~ 16687729 (-) True G105433
TU141553 lncRNA upstream 13201 16688056 ~ 16688590 (-) True G105435
TU141554 lncRNA upstream 14228 16689083 ~ 16689305 (-) True G105436
TU141562 lncRNA upstream 80481 16755336 ~ 16755558 (-) True G105443
TU141733 lncRNA upstream 377650 17052505 ~ 17055622 (-) True G105549
XM_039813988.1 mRNA downstream 38685 16537733 ~ 16549973 (-) False eda
XM_039813987.1 mRNA downstream 38685 16537733 ~ 16549973 (-) True eda
XM_039813985.1 mRNA downstream 51211 16533282 ~ 16537447 (-) False LOC120567144
XM_039813984.1 mRNA downstream 51211 16533282 ~ 16537447 (-) True LOC120567144
XM_039813983.1 mRNA downstream 55478 16530270 ~ 16533180 (-) False LOC120567142
XM_039814455.1 mRNA upstream 263485 16938340 ~ 16942236 (-) False si:dkey-27i16.2
XM_039814454.1 mRNA upstream 263485 16938340 ~ 16942236 (-) True si:dkey-27i16.2
XM_039812710.1 mRNA upstream 282788 16957643 ~ 16963536 (-) False rab9b
XM_039812711.1 mRNA upstream 282788 16957643 ~ 16962195 (-) True rab9b
XM_039812714.1 mRNA upstream 296317 16971172 ~ 16988999 (-) False znf185
TU141311 other downstream 720803 15866067 ~ 15867855 (-) False hnrnph1
XR_005640446.1 other downstream 969550 15604604 ~ 15619108 (-) False tspan17
TU141106 other downstream 1453922 15133530 ~ 15134736 (-) True G105086
XR_005640448.1 other downstream 1481624 15089404 ~ 15107034 (-) False rnf44
TU140912 other downstream 1849178 14735291 ~ 14739480 (-) False LOC120567441
TU141625 other upstream 282807 16957662 ~ 16963474 (-) False rab9b
TU141756 other upstream 467291 17142146 ~ 17151568 (-) False tmsb1
XR_005640507.1 other upstream 847286 17522141 ~ 17577811 (-) False nexmifb
TU142030 other upstream 1108705 17783560 ~ 17795223 (-) False LOC120567448
TU142092 other upstream 1312403 17987258 ~ 17991871 (-) False sfxn1

Expression Profile