RNA id: XM_039813384.1



Basic Information


Item Value
RNA id XM_039813384.1
length 959
RNA type mRNA
GC content 0.39
exon number 7
gene id tmsb1
representative True

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17142082 ~ 17151616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATTCTTCCTCTAAACTTTGGGAGCCAATGACAGCCAGAGTATCAGTGTCCATGTTGTTGTGCAGGGCGTGTTGTCTCTACTTAAACCGTTGATTTTGCAAGGATTACGCAGACGCATTTTCATACAACAGAACCTGCGCACCTCTGCTCCAGAAATCTTCCAAAATGAGCAACAAATGTCCAATCACTAAGGAGGTGCAGCAGTTTAAAAAGGAAAGGCTAAATAGTACTGAAGTGGTAGAAAAAAACCCTCTCCCAACGACGCAAGTAATTGAAGAAGAGAAGATAGCCATGGAAGAGAAAGCTGCCAAAGAGCCACTCAATAAGGAGTTGGAGACATTTGACCAACAAGTGCTCAAAAAGACTGAAGTGCAAGAAAAAAACCCTCTTCCAACTGCTGATGTAATTGAAGAAGAGAAGATAGCTTTGGAAGAGAAAGCTGCCAAAGAGCCACTCAATGAGGAGTTGGTGCAGTTTAAGACGAGCAAGCTAAGGAAGTCTATCACGAAAGAAAGTAACCATCGTCCAACTGCTGCGGaaATTGAAGCAGAGAAGAAAGCCATGAAAGAGGGGAAGAAGTAAAAGGGGAAACACCTTTTCATGATTCTTCTTGTTGAGACCTGCTCTTCCTCCATTTAGGAATCCTGTCCAGCATATCTGCCTATTcctgtgttttcatgttttattaaatgGTGTTTGGGCTGATCCTATGGGTGAAAATTTTGTCTGTAATCCCATGTAAATTTAAAGAAATGGGTGTACTCTATTGTGCTTTTTCATGCTGTTTAGAAAGGACTGAATGGAGTAATAAAACGATGTGACAAGTTAATTAAGTATTTCCATTCAATGAACCTTTTAAAAGAATCAAAATCTTGTAAGGTTCCTTGTTGCCATGCAGGAAATGTTCTAAAAACACatgattttgtttcttttataataaaaatgGATCTCAAACTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141769 lncRNA downstream 23818 17117751 ~ 17118264 (-) True G105577
TU141766 lncRNA downstream 23848 17117751 ~ 17118234 (-) False G105577
TU141767 lncRNA downstream 23848 17117827 ~ 17118234 (-) False G105577
TU141733 lncRNA downstream 86460 17052505 ~ 17055622 (-) True G105549
TU141562 lncRNA downstream 386524 16755336 ~ 16755558 (-) True G105443
TU141770 lncRNA upstream 555 17152171 ~ 17153593 (-) True G105578
TU141778 lncRNA upstream 15372 17166988 ~ 17167758 (-) False frmpd3
TU141793 lncRNA upstream 172844 17324460 ~ 17324955 (-) True G105598
TU141792 lncRNA upstream 182788 17334404 ~ 17335952 (-) True G105597
TU141943 lncRNA upstream 516468 17668084 ~ 17730694 (-) False kif3a
XM_039813174.1 mRNA downstream 3871 17126345 ~ 17138211 (-) False zgc:66447
XM_039813173.1 mRNA downstream 3872 17126345 ~ 17138210 (-) True zgc:66447
XM_039813169.1 mRNA downstream 16178 17118465 ~ 17125904 (-) True znf711
XM_039813171.1 mRNA downstream 16179 17118465 ~ 17125903 (-) False znf711
XM_039813170.1 mRNA downstream 16179 17118465 ~ 17125903 (-) False znf711
XM_039813385.1 mRNA upstream 2522 17154138 ~ 17158517 (-) True LOC120566760
XM_039813598.1 mRNA upstream 7883 17159499 ~ 17164212 (-) True prps1b
XM_039813599.1 mRNA upstream 7883 17159499 ~ 17164211 (-) False prps1b
XM_039813597.1 mRNA upstream 15280 17166896 ~ 17256932 (-) False frmpd3
XM_039813596.1 mRNA upstream 15280 17166896 ~ 17256932 (-) True frmpd3
TU141625 other downstream 178608 16957662 ~ 16963474 (-) False rab9b
XR_005640433.1 other downstream 467227 16592908 ~ 16674855 (-) False gria3b
TU141311 other downstream 1274227 15866067 ~ 15867855 (-) False hnrnph1
XR_005640446.1 other downstream 1522974 15604604 ~ 15619108 (-) False tspan17
TU141106 other downstream 2007346 15133530 ~ 15134736 (-) True G105086
XR_005640507.1 other upstream 370525 17522141 ~ 17577811 (-) False nexmifb
TU142030 other upstream 631944 17783560 ~ 17795223 (-) False LOC120567448
TU142092 other upstream 835642 17987258 ~ 17991871 (-) False sfxn1
TU142254 other upstream 1151653 18303269 ~ 18305695 (-) False reep2
TU142417 other upstream 1536172 18687788 ~ 18691410 (-) True LOC120566257

Expression Profile