RNA id: TU141943



Basic Information


Item Value
RNA id TU141943
length 1153
lncRNA type read_through
GC content 0.35
exon number 2
gene id kif3a
representative False

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17668084 ~ 17748547 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCACAGGAAAAGATCTGCAAAGCCAGATGCTGTGATCGAATCCCTTCTGCAGTGAAGACAGCGCAGAGGACACCTTGGTTTCACTGCAACTTCCATGTTACTTTAGGAAACAAATTCATTAGTCGAGTCTGAAGAATTTATTGTTCAACATtatttaaaagattaactgaataCACTGTATAGCTGGTATGGTTTTAAATGTGAATGAGCTGCACCTATGATAGGATTAAGACCTCTTGGCCAAGGGGACCTGTTATTTGTATTATAGTGTAAGACTGGATGTCATTTTAATGTCGCTCTGGAACGCATTTCGGTGGCAGCAGCTTCTGTTCGAATAAAGCTCTTTTACCTTAGCACCTCTAGCATTAAGGAGGAATCAAGCATAAACATTTCACTTGCAAATTCATTGGTTTTTCAAATGAGCAACACTCTGAAATAAGATGTTGAAAATAGAAATTGTGGACCTATAAACTGCGTTCATATGCTCTGAAATGGGTTGAGTGTATTGAACACACTAAGTGTTTCGCAATGAACACCACTTTAGTTAAGTTGTAACTTCTGTATTACTGATTTCCTGCTTTCATACTAAACAGCCCATTCTGATATGAACACATTATAATTGAATTCTAATTAATGGTTTATTTTCACTTAAATTACAGGAAATGATTATACTCTGAGCACGAGTTGTAGCCTTAGTGgtattaaataaaagaaatcattaacatgaaagCGGAAAAAAGATACAAACACTAATGTGGAGGGAACAAGTAGAGGGGGATATGTAGTATCAAGTATGTAACTGAATAATGCATTTTATACTTTTTCTCCCTTATGAAGCATAGGGGCATGCATGCCAGCCAGCTCTTATGTTAGTGCCATTCGCTATTCTAAGCaagtctttttatttattgtcaaaTATCCGAACCCTTTGTGTTACATTCATTTCcactaaacatactgtatgcctTAGTTTAATGCACTAGTATGAGGTTTTTGTGGGTGATGATTTCATTTTATGATATTCTGTAGTGGAGGCAAACTGTAGtggagttttattttgtatcataatttatgtcaaatgtttacaTCCACCAAACCCCTGGATATtctatttattaaattattttacacattttataaaaaaaaaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141792 lncRNA downstream 332132 17334404 ~ 17335952 (-) True G105597
TU141793 lncRNA downstream 343129 17324460 ~ 17324955 (-) True G105598
TU141778 lncRNA downstream 500326 17166988 ~ 17167758 (-) False frmpd3
TU141770 lncRNA downstream 514491 17152171 ~ 17153593 (-) True G105578
TU141755 lncRNA downstream 516516 17142146 ~ 17151568 (-) False tmsb1
TU142017 lncRNA upstream 24520 17755214 ~ 17755915 (-) True G105749
TU142028 lncRNA upstream 97928 17828622 ~ 17831148 (-) True G105759
TU142018 lncRNA upstream 126390 17857084 ~ 17859686 (-) False LOC120566288
TU142039 lncRNA upstream 144142 17874836 ~ 17876295 (-) True G105768
TU142043 lncRNA upstream 146338 17877032 ~ 17879121 (-) False G105769
XM_039813798.1 mRNA downstream 38187 17625557 ~ 17629897 (-) True zdhhc15b
XM_039813799.1 mRNA downstream 38443 17625557 ~ 17629641 (-) False zdhhc15b
XM_039813797.1 mRNA downstream 49537 17587676 ~ 17618547 (-) True abcb7
XM_039813793.1 mRNA downstream 90273 17522141 ~ 17577811 (-) True nexmifb
XM_039813794.1 mRNA downstream 90273 17524783 ~ 17577811 (-) False nexmifb
XM_039813834.1 mRNA upstream 18969 17749663 ~ 17769267 (-) True sh3rf2
XM_039813835.1 mRNA upstream 18969 17749663 ~ 17769264 (-) False sh3rf2
XM_039814419.1 mRNA upstream 52866 17783560 ~ 17795391 (-) True LOC120567448
XM_039813412.1 mRNA upstream 104023 17834717 ~ 17843371 (-) True LOC120566774
XM_039813411.1 mRNA upstream 113189 17843883 ~ 17846554 (-) True gnpda1
XR_005640507.1 other downstream 90273 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 516516 17142146 ~ 17151568 (-) False tmsb1
TU141625 other downstream 704610 16957662 ~ 16963474 (-) False rab9b
XR_005640433.1 other downstream 993229 16592908 ~ 16674855 (-) False gria3b
TU141311 other downstream 1800229 15866067 ~ 15867855 (-) False hnrnph1
TU142030 other upstream 52866 17783560 ~ 17795223 (-) False LOC120567448
TU142092 other upstream 256564 17987258 ~ 17991871 (-) False sfxn1
TU142254 other upstream 572575 18303269 ~ 18305695 (-) False reep2
TU142417 other upstream 957094 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 1485295 19215989 ~ 19219144 (-) False LOC120566717

Expression Profile