RNA id: TU142030


Basic Information

Item Value
RNA id TU142030
length 1718
RNA type TUCP
GC content 0.45
exon number 2
gene id LOC120567448
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17783560 ~ 17795391 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTCTCCGCCAGCTGCACGCCGCCCGTGACTAGATTTTCATGAAAAACTGTACAGATGAACCAACATCAGTCCGCTTTGTGTCGATCGTCTGCAAATGTCATTTTCCTTTAAGATGATGTAAGACATTACTTCATGGGacgatttctctctctctctctctctctctctctctctctctctctctctgcaagaGAACAGCTTGGAGCAACATTATCTTAAAGCTTCTGCCGGGCCAAACGTTTCCGCACTCAGCAGTTTGGAGAGATGGGTGCGCACAGGAGTCCCACTTCCATCCTCCTCTCTGCGAGCAACCTCGGAGAATGTTTCAGCATCCCAGTTGTCAAGAGCGACGCTTAGTAGCAGAATGATGGGATGCATGCACATTATTCAGTTGCTCCTGGACTGATGTGACTGAACCAGAAGCCAGACGCAAGACCTTTCCAcagaaaacttaaaacaaaaaacaaaaaaaggtgGGTCCTCAAGGTGGTTGTCATCACACTGTGACTGCTGCTGCAAGAGCCACAAAAGTGAGCGTGAAGGAGAGAGCGGCACTTCCTTCAATGAGCTCTCCACTTCCTGTTCTGAGACCCAGTCGGAGGCCAGTTCCCCTCAAGGAACCGTGATCTGTGGTCCCGTGAGCCGGCGCGCCAATGTCCAGACGCTGGACCGTCCCATGCCCAAAGGACCAGTTCACATGCTGCAGCAGGCAGAGATGCGCCGCAAGACTGACATGCTACGAGTGAGAACCTTCGGGGTCCGAGAACGAGAGGCCGCAAAAAGGAAAGCCAACAAGGAGAAGATGACTCCAGAGCAGGAGCTGGAGAAATGCATCCAGGAGTTCCGGCGCATCAGAATTCCTGATCGCTTTCCGGAGAGGAAGTACATGTGGCAATCAGAGCTCCTGAGAAAGTACCGTCTCTAAATATGAgtgggaagaagaagaaagagatggAAGTATCATGTCACCATCAATGGAGAGTATTAACTGCTTAGGCAATAGACTGCACTCTCTAAGGCACATACTGTATTAGAAAAAAACTATGGCCACTTTCCCGCCAGCATGACTAGCTGAGCACACAAAGTACAAGGCAGTGTGAGTCATTGATTTGTAAAGTATGCACAGTGTTGTGGATGATATGCACATGTGTAAATCAGGTTACTCCTGTTGGGGCTTACATCACTGACCCTGTTCTCACTTCAGATAGCAGACAGTGTACTAACTACTATTATATCACTAGTTGAAGCAACAAAGCAACCTCAGGGGCAACATCATTTCAAATCATCAACCTATCACATACTTTATGTGCAATTGCCCACAATAGCGAATTTTTTAAAATGGATGTACCCATATGGTGCTGAGAGTTAGCAATGGAATATCACTATAGCCTACTCCACTGATAACACATATACTTAAACAAGGCTTTGATATCGGCACTGCATGTCATTTCACCCTTAGCATAATTATGCAAtatcaaacaaactttaaattcACTGTTTTGTGTGATGGGTAAAAATGGTGTGTTGTGACTGGGGCTAACTTAAATGAGGAAAGCACTGCCTAGACCTGTTTGCCATTGTAAAACGTTTTGTCCAATGTTGTCATTATGTGTTGGATAGATGATGTTGTGTAGGAGATAGAGTAATGTCAATGGATATTTGACTAATCCTTGATTGTAAATGtgcaaaaaaactaataaatggGTTTGAATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142017 lncRNA downstream 27645 17755214 ~ 17755915 (-) True G105749
TU141943 lncRNA downstream 52866 17668084 ~ 17730694 (-) False kif3a
TU141942 lncRNA downstream 52866 17729591 ~ 17730694 (-) False kif3a
TU141792 lncRNA downstream 447608 17334404 ~ 17335952 (-) True G105597
TU141793 lncRNA downstream 458605 17324460 ~ 17324955 (-) True G105598
TU142028 lncRNA upstream 33399 17828622 ~ 17831148 (-) True G105759
TU142018 lncRNA upstream 61861 17857084 ~ 17859686 (-) False LOC120566288
TU142039 lncRNA upstream 79613 17874836 ~ 17876295 (-) True G105768
TU142043 lncRNA upstream 81809 17877032 ~ 17879121 (-) False G105769
TU142040 lncRNA upstream 84293 17879516 ~ 17881994 (-) True G105769
XM_039813834.1 mRNA downstream 14293 17749663 ~ 17769267 (-) True sh3rf2
XM_039813835.1 mRNA downstream 14296 17749663 ~ 17769264 (-) False sh3rf2
XM_039813689.1 mRNA downstream 35013 17729553 ~ 17748547 (-) True kif3a
XM_039812936.1 mRNA downstream 60546 17679700 ~ 17723014 (-) True atrx
XM_039812937.1 mRNA downstream 60546 17681107 ~ 17723014 (-) False atrx
XM_039813412.1 mRNA upstream 39494 17834717 ~ 17843371 (-) True LOC120566774
XM_039813411.1 mRNA upstream 48660 17843883 ~ 17846554 (-) True gnpda1
XM_039813923.1 mRNA upstream 52553 17847776 ~ 17856376 (-) True hspa4b
XM_039812632.1 mRNA upstream 61894 17857117 ~ 17859755 (-) True LOC120566288
XM_039814240.1 mRNA upstream 65637 17860860 ~ 17864154 (-) True gdf9
XR_005640507.1 other downstream 205749 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 631992 17142146 ~ 17151568 (-) False tmsb1
TU141625 other downstream 820086 16957662 ~ 16963474 (-) False rab9b
XR_005640433.1 other downstream 1108705 16592908 ~ 16674855 (-) False gria3b
TU141311 other downstream 1915705 15866067 ~ 15867855 (-) False hnrnph1
TU142092 other upstream 192035 17987258 ~ 17991871 (-) False sfxn1
TU142254 other upstream 508046 18303269 ~ 18305695 (-) False reep2
TU142417 other upstream 892565 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 1420766 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 1684795 19480018 ~ 19482558 (-) False tlr1

Expression Profile