RNA id: TU142092


Basic Information

Item Value
RNA id TU142092
length 3013
RNA type TUCP
GC content 0.41
exon number 5
gene id sfxn1
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 17987196 ~ 17995350 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttttgtttttatgcctcctctctcctgctgtagCACATCTCCCCCCTGATTGGTCGGTTTGTTCCATTTGCTGCTGTAGCTGCTGCTAACTGTATCAACATCCCACTGATGAGACAAAGGTAAGGAGGCCGTGCGACACTCAAAGTGCGTCATCGTTGCAATACATAATGGCTTTGACCTCGAGACGTCACAACACTAATGGTGAAAATGTCCCATGATTCTGATTTCACCTGCTTTGCTCCTTCAGAGAACTTCAACACGGCATTCCCATAACAGATGAGAATGACAACAGGTTAGGCGAGTCGACGAAAGCTGCACAGCAGGCTATCTCTCAGGTTGTGGTGTCCAGGATCCTCATGGCTTCTCCAGGAATGGCAATCCCCCCGTTTTTAATGAACCACCTGGAAAAGAAGGCCTTTCTGAGGAAGTTCCCATGGATGAGTGCACCTATTCAAGTCAGCCTGGTGGGATTCTGCCTGGTGTTTGCCACTCCACTGTGCTGTGCATTGTTCCCTCAGAAGAGCTCTATGCCAGTCAGCCGCCTGGAGCCGGAGCTGCAGGAAAAAATCCGGGCCAGCCACCCCGGAGTGGAGAGGGTCTACTTCAACAAAGGGCTATGAGCGTGCAGCCCCCCTCATCCAAACACTGCCATAACCCAGCTGCAGACTCAGTCCTCGCCTCTCAGCCAGCCCGCTTCATTCAGTGTGCCAAAGTTAAGTTTGTGTCGCCTCATTTCCACCGTTCAGATGGATATCTGAGGTCTCCCTCTCTCAGTCGGTCTCTTTGTAAACAAGATGTTTGCTTTTGTCACTGTGATTGTTGAAATTTATTGTAACTGCTAGAGAAGATTTTATCCGACTGGGCCGGatgaaaaatacaatgtttatcACGACAGATACTGTATAGTGGCCAGTGTAAGGTTGTTTTAAGTGGACATTTATTTCGGTGCAGTATTTTTAAGTTGGTGACTTGTCGCCGCCAAACCATTTCATACTCTCCTACCTGAGGTTGGCAGTCGTCTTATTTCTTACCTGCATTATAATTGATTATAATCAGTTTTTAACATTGATTATTCAAATACCTCTGCATTTCACGCATTTGCCAAATCTGTCCtcacaatatttttttagaCAACGATTACAGCCTCCTACTCTTGACAGTGTAATTTCAGAGAATGGCATTCACTTTAACTCTCTTTAATTCAGTTCATTTTGCCAAATGAGTGACATTCAGCGAGCCTTGAGGCCTCTTGACATCTAATCATGAATCTGAAAACCACTCTCCAGGGATCCAACCTCTAAAATGTGATACTATGATGGTGGCAACCCTTGATGGGCCAACACGGTGCTATTTGATGTCTTAATAATCAGTGTTTATCATTCTATTTATTCTGCTTGCCAAACATGCATGAACAAACCACTCCTCATGAGATTTAACCTCTGTGAAAAATAATTCTTCTGTAGATCTAGTCACACCCGGGCCACACTCAGGAGAGCTGAACGGTGGTGACAAAATGCGTCATTAATGTGATCGTTTTAGCGAAACACACTGGTTCTCATTTACTTAATCCATAATCTCCAACAGTTAATCCAGGATTTTGTGATCATAGTATTTGATACCACCAATATTCAGCAAGTCATTCATGCCTTACACAGTATGGTATTTACTTTCTGTACCTTAATGCAGCATCCTAAGATTATTACCGTACAAAGTGACACATTATAAATTTATGTGGCAGCTTTATCATATTGTTTTTGATGTGTTATAGTACATTTATATAAACATATGTTAGGTATGGATGTCAGCACTGGGGAAAAAATGCCCAAAGCATTCTCATGATAGTATTTTTCAAGACAATGATGATATACAGAGGGATCCATCTAAccaatatgttttaaatatgaCTGCTACTTTGAAACTCAGCCTGGTGAGTTCCCAGTTAAAACCTTGAATCATTTcagtatttcattatattttgctGATAAAGTAAGACATCTGCACACCTTAGTTATTGCATACAGTTCCATCAACACACGCTATCGCGGAGATAGAGCAGGTGCAGTCTCATGGTGTAACTTTAGTTGTGTACCTGTCCTGCAGTCGTCAGCATTCAGATGATAAAGCCCCATCTGGTATGTTTGGACACAGTGGGTGTAAACTGTGTCATGTGTGGGCCTGCTGCTGTTTAAAGTCAATGGCATTTGTCTGCCATATTTACAGCTACAGTATTTTACGCTTCTGGGACACTTTACATGTTAGATTTAtcgttgaacattttaaaatcagcGATCAGAGTGAAAAAGATGGACTTGaagccacaaaaccaacaagcGATATTTAGCAACATGATCCTCAATTTGAAACTTAAAAATTTTAGgatccagtgtgtgtgttcaaatcATCCAAATGATGGAAATGTTTCGATTTCAATTACATCAAACGCTTGTGAACAATGATTTGTCTTCATTGCATCTTTTGCTCATCATGGTGTGTAAGTTCTGTAAggtgtttaatgtttaatatactgtaaatcTACTCCCATATATAAGTAACTTTACTTTAGTGTTTCCAGAGCGATGTGTTGGAGTTGGAGCCGTACCCTAGCTGGTTTGAAGTAAAGTTTGTTATTCAAGTGTTAAAGGTAACTGAATGTAGCATTTTACAGCTGTTAATGGTGTGTTAGTccagaaaagcacaatattgtAACAGATTCCAAATGCtgcaaatttaaaaaacaaacataaaaacttgTTAAAGCTGTTCAGTTTCCTGACCACAATGTTTCCCGGTACATCCTTGATCAGTaagggagtaaaaaaaaaaagatacatactAAACTTGCCCTTTGGTAGACATTTCCGAACCTCCGACTGCATCTCATCAGAACTAATTCCCCTttaatatgttaaaaaatattaaattaaccaCCTGATGAATAACATCAACAAGCTTAGATCTACCAAATGAGATGAAATGTCACTACAGCCAAAGCGATACAAACAGACTCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142089 lncRNA downstream 6960 17978312 ~ 17980298 (-) True G105806
TU142063 lncRNA downstream 53788 17928832 ~ 17933470 (-) True G105784
TU142040 lncRNA downstream 105264 17879516 ~ 17881994 (-) True G105769
TU142043 lncRNA downstream 108137 17877032 ~ 17879121 (-) False G105769
TU142039 lncRNA downstream 110963 17874836 ~ 17876295 (-) True G105768
TU142111 lncRNA upstream 23580 18015451 ~ 18015927 (-) True G105820
TU142119 lncRNA upstream 30566 18022437 ~ 18023896 (-) True G105827
TU142127 lncRNA upstream 41536 18033407 ~ 18035248 (-) True G105834
TU142128 lncRNA upstream 43511 18035382 ~ 18035757 (-) True G105835
TU142139 lncRNA upstream 75578 18067449 ~ 18068456 (-) False LOC120566360
XM_039813050.1 mRNA downstream 18478 17959879 ~ 17968780 (-) True fbxl3l
XM_039813049.1 mRNA downstream 115689 17870202 ~ 17871569 (-) True sowahab
XM_039814240.1 mRNA downstream 123104 17860860 ~ 17864154 (-) True gdf9
XM_039812632.1 mRNA downstream 127503 17857117 ~ 17859755 (-) True LOC120566288
XM_039813923.1 mRNA downstream 130882 17847776 ~ 17856376 (-) True hspa4b
XM_039814379.1 mRNA upstream 4104 17995975 ~ 18000829 (-) False LOC120567416
XM_039814380.1 mRNA upstream 4104 17995975 ~ 18000677 (-) False LOC120567416
XM_039814378.1 mRNA upstream 4104 17995975 ~ 17999329 (-) True LOC120567416
XM_039812742.1 mRNA upstream 75554 18067425 ~ 18068492 (-) True LOC120566360
XM_039812573.1 mRNA upstream 89333 18081204 ~ 18090466 (-) True LOC120566259
TU142030 other downstream 192035 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 409447 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 835690 17142146 ~ 17151568 (-) False tmsb1
TU141625 other downstream 1023784 16957662 ~ 16963474 (-) False rab9b
XR_005640433.1 other downstream 1312403 16592908 ~ 16674855 (-) False gria3b
TU142254 other upstream 311398 18303269 ~ 18305695 (-) False reep2
TU142417 other upstream 695917 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 1224118 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 1488147 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 1980544 19972415 ~ 19981133 (-) False fgf18a

Expression Profile