RNA id: TU142119


Basic Information

Item Value
RNA id TU142119
length 1293
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G105827
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18022437 ~ 18023896 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAAACAAATGTTAGTTATATCTGTGATGCATTTAGAGATTGTAGAATGTCATTACAGTACTGTATTTCTCCTGGCCTTCGATCCTGAGCTCTGATCCACCTGTgtataaaaaactgtaaatcaaaGAAAGAACAGGCTGGTTTTGTAGCGAGAAGAATCATCGAAAGACTTTAGGACTCCAGTGGGTTTATTTTTGCATTCCTCAGAAGCACCAAGCAGGTATTGTTGTGCCCAACGGTAACATGGATCAGTGAGAACACTATTTTGAAAGACGAGGTTAAGACAGTAACAACAACATAAGATGCCCTTATGATGACTGGTCAGGTGAAacttctcacctttttcttaTATTCCAAACACTAAAAAAAGGCCAAATAATGTAAACAATGTTGAGAGAACAAACAAAAGAACATAACAGCACcagacacaaataaacataCTGACAGAAAGTATAAAGAGACGGACTGAGTCAGTCCTCGAGCCGTAGCACCAGTACACATCCCCACTGTCAGTCCAGCAGCCTCGGGATGAGAAGGCAACGCTCAACCAAAGTGAAGGCAGTGTCACAGTGTTCAGCATCCTCATCCACATAATCACCCCAAGCATCATCCCCATCCCCTCCTTCGTCCTCCTCTTCGTCATCATCGCCTTCCTCCAGAAGATCACCTCCATACAGCGGctcatcctcctcatcttccactatctccatctcctccatgtcgtcgtcctcttcctcctccgctTCTtcatcgtcgtcgtcgtcgtcttccacctcctccatctctaACCCACACACCTCCCCGTCCTccacctcaccgtcctctctctcctccttggAGGAGGTAGGAGTGGAAAACCCTCTCCCTTCAGTCCTGTCTGTGTGGTATGACCTGCTGGAGGGGACGAAGCTGGAGGTAGCAGTCTTTGTGTTGATATagagacgaggaggaggaggaggcggccCCTGCCTGGCCGACGCAGCCTGGCCAGCAGGGGAAGTGATGGCAGCAGAACTGGCTCCTCTGGAATCTGGGCCTTGCGAGAGAGCGACAGGCTCAGCCATGGCCCCAGGCCTCACGGAGGTCATGTTGGGCACATATTCACGAATCTCCCCCGGCTCCAGAGGGTCAGGCCCACAGGGGTCGTGTTCACTGCAGGACAGCTTCCCGTCCAGCTTGGAGATGAAGAGCATGCCTTCACGATGCTCCTTACAGTAAGAGCTGGGGCACATCTCACAGAACGAAGCTGCCTCTTTACCACAGACGTCACACTGGTGCCATGGACACTCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142111 lncRNA downstream 6510 18015451 ~ 18015927 (-) True G105820
TU142089 lncRNA downstream 42139 17978312 ~ 17980298 (-) True G105806
TU142063 lncRNA downstream 88967 17928832 ~ 17933470 (-) True G105784
TU142040 lncRNA downstream 140443 17879516 ~ 17881994 (-) True G105769
TU142043 lncRNA downstream 143316 17877032 ~ 17879121 (-) False G105769
TU142127 lncRNA upstream 9511 18033407 ~ 18035248 (-) True G105834
TU142128 lncRNA upstream 11486 18035382 ~ 18035757 (-) True G105835
TU142139 lncRNA upstream 43553 18067449 ~ 18068456 (-) False LOC120566360
TU142250 lncRNA upstream 262062 18285958 ~ 18314401 (-) False reep2
TU142304 lncRNA upstream 526214 18550110 ~ 18551684 (-) True G105967
XM_039814379.1 mRNA downstream 21608 17995975 ~ 18000829 (-) False LOC120567416
XM_039814380.1 mRNA downstream 21760 17995975 ~ 18000677 (-) False LOC120567416
XM_039814378.1 mRNA downstream 23108 17995975 ~ 17999329 (-) True LOC120567416
XM_039814377.1 mRNA downstream 27087 17987196 ~ 17995350 (-) True sfxn1
XM_039813050.1 mRNA downstream 53657 17959879 ~ 17968780 (-) True fbxl3l
XM_039812742.1 mRNA upstream 43529 18067425 ~ 18068492 (-) True LOC120566360
XM_039812573.1 mRNA upstream 57308 18081204 ~ 18090466 (-) True LOC120566259
XM_039813916.1 mRNA upstream 169321 18193217 ~ 18197415 (-) True egr1
XM_039813723.1 mRNA upstream 275424 18299320 ~ 18314413 (-) True reep2
XM_039813724.1 mRNA upstream 278357 18302253 ~ 18314415 (-) False reep2
TU142092 other downstream 30566 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 227214 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 444626 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 870869 17142146 ~ 17151568 (-) False tmsb1
TU141625 other downstream 1058963 16957662 ~ 16963474 (-) False rab9b
TU142254 other upstream 279373 18303269 ~ 18305695 (-) False reep2
TU142417 other upstream 663892 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 1192093 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 1456122 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 1948519 19972415 ~ 19981133 (-) False fgf18a

Expression Profile