RNA id: XM_039812742.1


Basic Information

Item Value
RNA id XM_039812742.1
length 741
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC120566360
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18067425 ~ 18068492 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTATCTGTAGCAGGCCACTCCTTTTTTTGTCTCATAAACTCCTTCCTCAACTCGTCTCCTCTCTTTCACCATCATGGCTTTTACTGGGAAGTATGAGCTGGAGAGTCAAGACAACTATGAGGAGTTTCTGGAAGTAATTGGGCTCCTCAATGCCAAGACAGAGCACAAAGTGGTAACGGAGGTGCTGCAGGATGGGAAGGACTTCACCTGGACACAAACCCTTCCCAACTGGACCTGGTCCAACAAGTTCACCGTTGGACAGGAATGTGAGCTGGCGACGATGACAGGCACTAAATTCAAGTCTCCTGTCACCATGGAAGGCGACAAGATTTCAATCCAGTTTCCTCAGTATCACTTCACAGCAGAGATCATTGAGGATAAGCTAGTGATGAATTGCATCACTCCAGGAGAGAAGGGTGTGACTTTCAAAAGAGTTAACAAGAGGATCTAATGCTGCGAGACTCAACATGCTTCAATGGAAAAGAGGCTGCATGCAGGACGCTAAACACATCATATAAAATGCTCACTCCAATTACTGAAGCAAGAGGAATAAAGTAACCATCTGTAGTGAGGAGCAAGTGGAGCATCTCCTAGCTTCACAGgactgtgttttgttgtttaactttcagattttaaataaatagaagGGGTGAAACTATGAACTGTATTtctacatggatgaaatcattTACCTGTACCAGTATTCATGTTTGAGCTAATAAAAATCATTGAAATATAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142128 lncRNA downstream 31668 18035382 ~ 18035757 (-) True G105835
TU142127 lncRNA downstream 32177 18033407 ~ 18035248 (-) True G105834
TU142119 lncRNA downstream 43529 18022437 ~ 18023896 (-) True G105827
TU142111 lncRNA downstream 51498 18015451 ~ 18015927 (-) True G105820
TU142089 lncRNA downstream 87127 17978312 ~ 17980298 (-) True G105806
TU142250 lncRNA upstream 217466 18285958 ~ 18314401 (-) False reep2
TU142304 lncRNA upstream 481618 18550110 ~ 18551684 (-) True G105967
TU142426 lncRNA upstream 641550 18710042 ~ 18729032 (-) True G106057
TU142435 lncRNA upstream 930048 18998540 ~ 18999875 (-) True G106066
TU142437 lncRNA upstream 933280 19001772 ~ 19002114 (-) True G106068
XM_039814379.1 mRNA downstream 66596 17995975 ~ 18000829 (-) False LOC120567416
XM_039814380.1 mRNA downstream 66748 17995975 ~ 18000677 (-) False LOC120567416
XM_039814378.1 mRNA downstream 68096 17995975 ~ 17999329 (-) True LOC120567416
XM_039814377.1 mRNA downstream 72075 17987196 ~ 17995350 (-) True sfxn1
XM_039813050.1 mRNA downstream 98645 17959879 ~ 17968780 (-) True fbxl3l
XM_039812573.1 mRNA upstream 12712 18081204 ~ 18090466 (-) True LOC120566259
XM_039813916.1 mRNA upstream 124725 18193217 ~ 18197415 (-) True egr1
XM_039813723.1 mRNA upstream 230828 18299320 ~ 18314413 (-) True reep2
XM_039813724.1 mRNA upstream 233761 18302253 ~ 18314415 (-) False reep2
XM_039813347.1 mRNA upstream 247321 18315813 ~ 18343775 (-) False kdm3b
TU142092 other downstream 75554 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 272202 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 489614 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 915857 17142146 ~ 17151568 (-) False tmsb1
TU141625 other downstream 1103951 16957662 ~ 16963474 (-) False rab9b
TU142254 other upstream 234777 18303269 ~ 18305695 (-) False reep2
TU142417 other upstream 619296 18687788 ~ 18691410 (-) True LOC120566257
TU142573 other upstream 1147497 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 1411526 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 1903923 19972415 ~ 19981133 (-) False fgf18a

Expression Profile