RNA id: TU142417


Basic Information

Item Value
RNA id TU142417
length 2111
RNA type TUCP
GC content 0.41
exon number 5
gene id LOC120566257
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18687788 ~ 18691410 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCTCATAGGCTGCAATGCTCTACAcccactctctcacacacacacacacaaactttgccCTCTTTGACTCTAGCTAATCTCTCTAGCTGCATTTATTACAGCTTCTTTCGATCAGCTTCTCCAcaagaaacaagattttttgCGAGCACCGGTGTCATCTCGACCAAAGAGGAAACCAACAATGTCCAGCTTCATGAAAGTCTTTCTGCTCCTGGCTGTCATGGTCTGCATGTCTAAAGCCCAACAAGAAAAAAGCCAGGGTCCTGGTCAATCAGACCAGTGTCTGTGTCAACGTGTCAGGAATAGAATTGGCTCAAAGACTGACATAAAGGACATCCAGATCTACCCAGCAACCATCTTCTGTAGCAAAGTGGAGATTGTTGTCACCGTCAACAGCGGCCTTCGCTACTGCCTGAACCCCAAACTGAGGGCAGTGCAAAAACTCATGGCATCCATCATGAAACGAAAAACCTCCACTACAGCCAGACCAACTGAGACCACTTCCACCCCATATTGAAACAAAAATCTGTTGGATCAAcatgcaaataaataaacatcagTTGCACATATTATAAGCATGTTTACTGAAAATGATTTATGCAGGtttactatactgactttttattacACAAATGCAACGTTTTCTTGTTCAGTCAACATAATCTGCTCAAGTAGGTCTGATGCCAGAGTTATAAAGCTTTGAAACGTTTTATTCAAGTATTTTGTATATCATTATACCTGGGGCAGGATGATATAAACGAtgtgtgcacacaaaaaaagtgtaCGTCTTTTCCCATACATAAACCAGTAAAGGAATGATAAAGGAAGAATGTGCACCTCACACATACTTCCGACCAGGCGTATAATGTTACAACAACGTTTCAGATGCTCAAAGTTATTCATTGTTTTGATCACCGATAACAGCGTTAGATGGTTGATATGGTTAGCTTCCTtatggtctgttttgaaatccTGGAGCAGACAGCCCCACATTGCAGCTGTTGTGATTGTAGGAGGGTGTAGCCGGTTTTAATtgtcagtgaagagaaactgaaGAGAAAAAGATAGTGTACATGAACCATAATAGTAACCTCCGCCCCATTTCCCACCGCCCACCGGTAGACCTCTTTGCTTGGGAGGAGAAGCGCTCCAGAGACATCTCCTTAAAGTCAGTCCACCGGGGCGGGAAGTGAAAGGAAGGACGGTTAACCGCGGGGTGTGCTAGGAAGGATTACGATCTTTACTCGCTAGTCTATATCCCCGACGTTcgacttccgggattgctccggtgccgctggaGGCTCATATAAACATGAGGGTCATGCATGTACCAATTtctaaagaaataaacaaacttAAGACATGTAGCTTGGTGGAACATCgagcaaaaataaatgtttcctaTCAAACAAATTTCAAGTCTAGATTTCatgaaagtaaaaagtagtaaaCTATGTATCTTTGTCTATGATTTTTGAGATAAATTGTAGGATTGTATGCTCCCCTTACCCACAAAACTGGATTGTCTTAAAAATGTGCTCTCACCACGCTTAAACGGATGGTTCACCCAGATTAGAAAATAACATCTTTTCATACTTAGGCCTACCTCAAGGGGTTTCCAGCTGTAATGAAGGTCATCTTCATCACTAATATTTTGCAGCATTAGTACATTGTAGCTCATTATGTTACGGGTAAATAAAATGAGGAACAACAGTTTTGAatgtttatttgaaaatattaaCAATCTGTTTTGTGAAGGTTGCAGCTGGTGTTGATTGGAGGCCAGCCCTGTCAAGAGAAACACATGTACTCAGTTTGCTAGTTTGGTTACCTACACATGTGCAGTTACTATAGTCTTTGGCTGATTAAGTGAATGCAGGTTAACAGTTGCTGTTTGTACAATAGTAAACTTTGTGTTCAAGTAACTCACCTCTGTTGTGTCTCCTCTCCAGATTGTTCAGGCTAAAAGAGTTTTTATTCTCAGTAATACAGCACTATAGCATATAGTCACCTGCTGTTGCCTTTACAGTCCTTTATCATGTTCTAATTCTTATCATTACAAATAGTACATTACAAGAAATCAGGGTTTTCAGTATAATTTAATAAGTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process

KEGG:

id description
ko00630 Glyoxylate and dicarboxylate metabolism
ko00350 Tyrosine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142304 lncRNA downstream 136104 18550110 ~ 18551684 (-) True G105967
TU142250 lncRNA downstream 373387 18285958 ~ 18314401 (-) False reep2
TU142139 lncRNA downstream 619332 18067449 ~ 18068456 (-) False LOC120566360
TU142128 lncRNA downstream 652031 18035382 ~ 18035757 (-) True G105835
TU142127 lncRNA downstream 652540 18033407 ~ 18035248 (-) True G105834
TU142426 lncRNA upstream 18632 18710042 ~ 18729032 (-) True G106057
TU142435 lncRNA upstream 307130 18998540 ~ 18999875 (-) True G106066
TU142437 lncRNA upstream 310362 19001772 ~ 19002114 (-) True G106068
TU142448 lncRNA upstream 326342 19017752 ~ 19018811 (-) False rgs14b
TU142450 lncRNA upstream 355854 19047264 ~ 19047863 (-) True G106073
XM_039812568.1 mRNA downstream 1356 18685048 ~ 18686432 (-) True LOC120566255
XM_039812569.1 mRNA downstream 8536 18677831 ~ 18679252 (-) True LOC120566256
XM_039813906.1 mRNA downstream 10422 18666064 ~ 18677366 (-) True LOC120567095
XM_039813051.1 mRNA downstream 29229 18642492 ~ 18658559 (-) True gfpt2
XM_039813239.1 mRNA downstream 46980 18622123 ~ 18640808 (-) False mapk9
XM_039812729.1 mRNA upstream 8014 18699424 ~ 18701803 (-) True si:dkeyp-72g9.4
XM_039813617.1 mRNA upstream 14685 18706095 ~ 18908295 (-) True LOC120566918
XM_039813621.1 mRNA upstream 15877 18707287 ~ 18864257 (-) False LOC120566918
XM_039813619.1 mRNA upstream 15877 18707287 ~ 18839898 (-) False LOC120566918
XM_039813620.1 mRNA upstream 15877 18707287 ~ 18839826 (-) False LOC120566918
TU142254 other downstream 382093 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 695917 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 892565 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1109977 17522141 ~ 17577811 (-) False nexmifb
TU141756 other downstream 1536220 17142146 ~ 17151568 (-) False tmsb1
TU142573 other upstream 524579 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 788608 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 1281005 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1539498 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 2436428 21127838 ~ 21130970 (-) True G106728

Expression Profile