RNA id: XM_039813339.1


Basic Information

Item Value
RNA id XM_039813339.1
length 4000
RNA type mRNA
GC content 0.46
exon number 19
gene id rgs14b
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19017752 ~ 19044951 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAGCACTTTACTGTGTCCCCTGACAGTGTGCACATCGCATAAAGACTTCAGCTTGTAGTCTGGTGTCTGAGCCACCATGGCGAAGAACTGTAATTCTCTAGGGATTCCTATAGGCCACATGAGCCAGGCAGTGTCGGACGGAGAGTTGAACATGTCTGCACGGGGCTGTGGAGGCAGCAGCTCCAGCCTTCCAGGGACTCCGGGCGGAGAGAGCGGCCCAGCCAACAGTGTGCTGTCCTGGGCCGTCTCATTTGAGAAGCTGTTGGAGGACCCCTTTGGAGTCCGCCAGTTCACGGCTTTCTTGATGTCTGAGGTGAGCGCGGAGAACATTTTATTCTGGCAAGCTTGTGAAAAATTCAGGAAGATCCCAGCCAGCTCCTTGGAAGAGCTGAAAACAGCAGCTCGCTCCATCTACAACACCTACCTGTCTGACAGCGCTCCATACTCGGTCAACATCGATGACACAGCCAAGACAGAAGAAAAGGACCTGGAACAGCCCACACCTGGCATGTTTAACAAGGCTCAAGCACAGATATTTAAACTGATGAAGATGGACAGCTACAGGCGCTTTGTGCGCTCTCCTCTCTACCAGAGCTGCACCTTGGGAAGCGTAGAAGGTAAACCTTTACTTCAGCTCTCTACAGAGCCGGTCCGCATGGGATCCTGGGAGGACGTGGCCACCAGAAGCCCCTTAAGTGACAAGAAGAACAAGAAGTCATGCTCCAACAGCTTGCCAGGTGGCAAGAGTGCTTCGGAGAAACAGCGACAGAAAAGAGACTCGTGGGGAGATGCATCCAACACCCATAGTTCAGTGTCGCGGAAAGAGTCCAATATGTCAGTCAAGTCAAGCAGCAGTGTGGAGCTTGGCTCCCTCTACCAGCAGATGGAGAATGGCAGATCGAGTACCCAGTCTCCAGAACAGGGTGGTAGAGGTGGGAGTCGGATAGGGGTGGAGGGAGGCTACTGCTGTGTCTACCTACCCGATGGCAGTGCCTCCCTGGCCCCTACGCGTAATGGCCAACCCATCAAAGACATGCTGACTAGCCTGTGTGAGAAGAGAGGCTTTCCGCTGAAAGATGTCATCATCTACCTTCATGGCAAGGACAAGCAGCCCTTATCGCTGGACCAGGACTGCTCCGTTCTGAGAGATCAGCAGGTCTCTCTGGAGCTCAGGGTGACGTTTGCgcTGGAGATTGCCTTCACTGGTAAGACAGTTGGGATCATGGCAAAGTCCAGTAAGACGCTGCAGGACGCCCTCTCTGCGGTGCTGCAGAAACACCAACTCAAGCCGCAAGAGGCCGTGGTCACCATGgTTGGAAGCAACGAGCCTTTGAACATGACCAGCACTGTGTTCAGACTAGCGAACAAGGTGCTGCGACTTGAAAAAACCAAAGGAAAAGACCAGACCAACAGAGGCAGTGGTTCTGCTTTAGCCACACCGGCAGGAGCAGTGAGTGCAGGAGGGCTGGAGGCCCAATCATCGCTGCAAACCGACAGAGCCAAGACTCAGTCCAAGCCCGGTAAATACCGCGACATGGAGGGGCTTCTGGACATGCTGTCGAGGGCCCAGTGCTGCAGAGTTGATGACCAGCGAGGCCTTTTGACCAAAGAGCAGCTAGAGGTCCCTCTGTTCCTGAAGCTGGCCTCAGACCAGGGCCAGGACACAGAGCCAGACGAGCCGAGTACAACCAGCTCTTCCAATGCAAGTTCAGCTGAAACCCCGGACTCTGCCGAATCTAAAGCCAAAGACTTAAGGGAAACATCAGTTTGAAagacttctgtgtgtgtgatggacaAAGACACAATCAGAAACGACATCAAACATCTCACAACATCATGAGACCAATCGTGTCAAAAGACGACGAAAAATGgtcaagcactttttttttataattgtttaCAAATAAGCTCTGAAAGCAGTGTGCCACCATCTCTGCTACTGATAATTGGCCTCTTGAGGCAATatgtaaagaagaagaaagatcaTGGCAAGCATTTACAGTGTCATTTGGAAACACTACAGATGTTAATGGGAAGAATGTTTGctatgaaatgttttgaaaagaAGTTTTAGCTCAAAATTTCACCCTGAAGCCaatgtgtttgctgtgtttatCGTTTAACGCTGTAAAGTTCACATTGCTTACATTTCTCACAATCTCACATCGTAGTAATGCTTTTCTCTGAACTCTAAGCAAAAACATGTTTCTGCACAGGACTGTCCAGAAGGGGGTTTTGAAGTGTattgcacaattgtttttttttgttcttctttatTTGAATTGAAGAGAATATTTTTACTGAGATgagtttttaatattttaaattacaaattTTCATTCTGTGTGCTCACTTGCtattttcaaatgtgtttgcGGTACTTAAATTTAACTGTTTGCTGTGATGGCACTTTTAGCCCTGGTCAAGTCCTGTTTTCCTGTCACCTTAGACAACATCTCAGGGTCCAGATCATGAATGTGTAATGAGATATAATGGAATGAATCCGATGATGTGAACATCAACATATACCGCAGGGTGTATCCAAACAATTAAATTGTTTCATGATGAAATAGGATCCTGTTTGCCTGGTTTTGTTGTTGGGGGAGTGAGACGTTAAATTACAGCTTTTAGCCCTCTATGAGGAATCTTTTGGATGAATCACTAAGGTTAGTTTCTGGCTTGACAAATGCTACGTGATTTGGTTTTCTATGTGGTGCAGCCAGGCCCCACTGGCTGTATGACTCATGCAGTGTAAAACAAGTCTAATGTGCATCTGTCTGTAGGTGTAAATTGTAACTAGCTTTGATTGCATTATCTTGTGCCTTTGTTGTATCCTGGTTCAGAGACCTCCTCCTAAATGGCATCATGTAATGATGCtgttttgcacatttttgaCATTGGATCATTGcagtgctgtgattggctcttTATGAAGGGTTTCTAGCCAATGGCTTGCTTAATCTGTCTACATACTTGTTGCTGGAAGGTGTTTTCCAGTTGAAGGGCCTGGGAGGACTATTATGGGGTGCATTTGGCTGTTGTATGGGTTACAAAACAAATTATGAGTCATAGATGGATTCATCCACATGGATGATGTCAGCAGCATCTAAGTGACAGTATGGGCTTTAGGAAGCGTCTCATTTGCCAACCTTGTAGAAATGATTGTCTCTGAAGTAATTAACCTTAGACAACGAACAGTGCTATGTAAGAAACCATTGTTtgtcacactgtgtgtgtgtgtgttgtgtccgtCCATGCATGAGTGGTGTGTTGGCAGAACTATGAATGGGCAGAGAGGGGTGTGCTCTCACAGACACCATAGCAGCAGTGAGATGAGGAGTGCCATCTACTCCACCGCACGTCTGTACTGAGAGAAGGAagaagggagagaaggagCTGCACAACCACAGCATTCCAAAGGATATCATCTAATCCTAAACCCACGTCAGCACTGAACTTCTCCTGAGACAAATCTTCAAGTCAGCAATGGAACAGAAGGCGAATGAGtgTCCCACCACCACCTCTCCTCAGAAGCGCATGAAGAACAGGTCCAAATCCACAGAGGAGATGCAACAGACGAAGAAGGCATTTTCCTCACAAAAATCACTCCCGGGCAGACCAGAGCTGGAGAAAGTGAAGGAGTCTCCTGACTCTGACACGCCGTCGTCCTCCATGGAGGAGCTAAAGTGATAAATGGAAGGACAGTTCATCAAGTTACAAGATCATcataaacacaacatacatGACATGTACATATGAACACAGGGaaacatacaaaatattataaaaGATAATAGTGAACTACATTGGGCCTATAAAACACACAagcaatgattttattattggTTAAAGGACATTGAAGACACACataaactcacacacactgaaacaatcACTTGTAAACACCCGTGATGATGCCGTTTCATTGTACTGTGATTGTTGTATACATACCACACTGAATGTGTATTATTGAAAATAAATTGATGCTGTTGAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142437 lncRNA downstream 15638 19001772 ~ 19002114 (-) True G106068
TU142435 lncRNA downstream 17877 18998540 ~ 18999875 (-) True G106066
TU142426 lncRNA downstream 288720 18710042 ~ 18729032 (-) True G106057
TU142304 lncRNA downstream 466068 18550110 ~ 18551684 (-) True G105967
TU142250 lncRNA downstream 703351 18285958 ~ 18314401 (-) False reep2
TU142450 lncRNA upstream 3605 19047264 ~ 19047863 (-) True G106073
TU142451 lncRNA upstream 5715 19049374 ~ 19055694 (-) False G106074
TU142452 lncRNA upstream 5715 19049374 ~ 19053009 (-) True G106074
TU142462 lncRNA upstream 27189 19070848 ~ 19071183 (-) True G106084
TU142463 lncRNA upstream 28404 19072063 ~ 19072742 (-) True G106085
XM_039814450.1 mRNA downstream 2413 19002512 ~ 19015339 (-) False slc34a1b
XM_039814448.1 mRNA downstream 2413 19002512 ~ 19015339 (-) True slc34a1b
XM_039812974.1 mRNA downstream 66219 18938218 ~ 18951533 (-) False simc1
XM_039812973.1 mRNA downstream 66220 18935651 ~ 18951532 (-) True simc1
XM_039812972.1 mRNA downstream 83313 18915363 ~ 18934439 (-) True cnot6a
XM_039813332.1 mRNA upstream 15618 19059277 ~ 19068071 (-) True LOC120566723
XM_039813331.1 mRNA upstream 15618 19059277 ~ 19068067 (-) False LOC120566723
XM_039813333.1 mRNA upstream 15618 19059277 ~ 19068066 (-) False LOC120566723
XM_039813963.1 mRNA upstream 30323 19073982 ~ 19079321 (-) True rbm22
XM_039814250.1 mRNA upstream 100050 19143709 ~ 19145147 (-) True slc35a4
TU142417 other downstream 326342 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 712057 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1025881 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1222529 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1439941 17522141 ~ 17577811 (-) False nexmifb
TU142573 other upstream 172330 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 436359 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 928756 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1187249 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 2084179 21127838 ~ 21130970 (-) True G106728

Expression Profile