RNA id: XM_039813326.1


Basic Information

Item Value
RNA id XM_039813326.1
length 1397
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC120566717
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19215989 ~ 19250436 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTAATACAACAACGCTCTGGTCGGCTCAAAGTTTTCACACCTTCTCCTCTGAGGCTGATCGCTAACAGGACACATTTCAGGCTGTCCAGTGTAGGATGTTCAGGTAGAAAAGCTGCTGACTGGATCAACAGAGGCTGAACACTGAGGAGACATGGAAGCTGTGGTTGGACTGTTGCTGATGCTACTCGGAGTCTCTCATGGTGTGGAAACCTACTGTGATGGCCGACAGGATGGAGCTCAGTGTTATGGAGTTTTGGGAGGATTATTGGTCCTCCAGCTGATGGAAAGCGCCTCAGGAATATCTAGATACCAGTGGTCAAAAAACCCAACAATAattcttattggtagaaagAACCAGATTGTGTTTAATGAGATAGCAAACAGATCCTTCTTTACTCCCAGTAATGGAACATTTAGGATCAACAACCTGAGCTGGACTGATGGAGGTGAATATAAACTTGTAATCTTTGGTTCAGATGGCCAGGTATCAGAGCAGCGGACTCTACAGTTGGCTATTCAagGTGTGGAAACCTACTGTGATGGCCGACAGGATGGAGCTCAGTGTTATGGAGCTTTGGGAGGAACTGTGGTCCTCCAGCTGATGGACAACGCCTCAGGAATATTTAGATACACATGGtcaagaacaacaacaaaaatagtcAGTGGAAGAAAGAATATGATTATGTTTAATGAGATAGAAAACAGATCCTTCTTTACTCCCAGTGATGGAACATTTAGGATCAACAACCCGAGCTGGACTGATGGAGGTGAATATAAACTTGAAATCTTTGATTCAGATGGAAAGATATCAGAGCAGCGGACTCTACAGTTGACCATTCAAGCTCCTGTGTCCTCTGTCCTGCTGGTCTCTGAGTGTCTGTCCCAGGGAGAGATGAGGGTGTCCTGCTCCTCTGAGGGAGGGGACAGTCCTCAGTACAGCTGGACTCTGGATGGACGCACACTGACAGATGCTGAGCTCTTCTCTGGAAATACTGAGACTAACAGCATCACTCTGAAACAAAAGGTCTCAGGACGACTGGTCTGCTCAGTCAGGAATCAAGTCAGTAATGTCTCAGAAGAAAAGACAATATCTACATGTGGCTTCATACACATTAACTGCACCTTAACCAACGGGACACACATATCAAAGTGGGTGTTTGCAGCCAATAATACCCTGTGTCAGCCAACAACTACTCCTACCTCCACCGTGGGTAAGACGACTGGCATCACAGTGTCAATTAACCCCTGCACTAAAACACATCCTCCAATCAAAATATGACCCTCCCCTCCCCAGAGATGACCCATGGTACATTAGGTACTTGCCGATAATGGCCGGTGTACTGTCAGCGTTGGTAATTCTGTTAGTGGTCGGGGTGGCTGTCGTCTGTGCCcagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142574 lncRNA downstream 3156 19214800 ~ 19215918 (-) True G106164
TU142520 lncRNA downstream 85061 19132620 ~ 19134013 (-) True G106128
TU142523 lncRNA downstream 88083 19129286 ~ 19130991 (-) False G106128
TU142463 lncRNA downstream 146332 19072063 ~ 19072742 (-) True G106085
TU142462 lncRNA downstream 147891 19070848 ~ 19071183 (-) True G106084
XR_005640452.1 lncRNA upstream 11594 19262030 ~ 19262872 (-) True LOC120566722
XR_005640450.1 lncRNA upstream 12477 19262913 ~ 19265476 (-) True LOC120566720
XR_005640451.1 lncRNA upstream 36640 19287076 ~ 19288469 (-) True LOC120566721
TU142694 lncRNA upstream 62373 19312809 ~ 19314416 (-) True G106243
TU142699 lncRNA upstream 69827 19320263 ~ 19321306 (-) True G106248
XM_039813820.1 mRNA downstream 15973 19176247 ~ 19203101 (-) False pdgfrb
XM_039813819.1 mRNA downstream 15973 19176247 ~ 19203101 (-) True pdgfrb
XM_039813990.1 mRNA downstream 43333 19161748 ~ 19175741 (-) False LOC120567146
XM_039813989.1 mRNA downstream 43333 19161748 ~ 19175741 (-) True LOC120567146
XM_039814252.1 mRNA downstream 72485 19145238 ~ 19146589 (-) False LOC120567311
XM_039813322.1 mRNA upstream 26695 19277131 ~ 19282674 (-) True LOC120566716
XM_039813324.1 mRNA upstream 26695 19277131 ~ 19282673 (-) False LOC120566716
XM_039813323.1 mRNA upstream 29500 19279936 ~ 19282674 (-) False LOC120566716
XM_039812734.1 mRNA upstream 51369 19301805 ~ 19305065 (-) True arsia
XM_039812548.1 mRNA upstream 81270 19331706 ~ 19334698 (-) True aldob
TU142417 other downstream 527664 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 913379 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1227203 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1423851 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1641263 17522141 ~ 17577811 (-) False nexmifb
TU142773 other upstream 229582 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 721979 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 980472 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1877402 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2539817 21790253 ~ 21790725 (-) True G106988

Expression Profile