RNA id: TU142574


Basic Information

Item Value
RNA id TU142574
length 1119
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G106164
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19214800 ~ 19215918 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGTCTTAGATAATACATAGTCTAAGCAAATTATATCTCAGGATTGCCtgcaacagtaggctacatgcaGGTTGCTTACTGAGTTAGCAGTAAAAGGAGGAACACCTTCTAAAggtgtttttctatttttctcctTTACTGAAACAAGAGGGGACAATGTAGTGTGAGAAAATTAACTACGTGTCAGATTCTAAGAATGCACTATTTATCTTTTAGCAACATCAGGTATTTTCTATATTTAGTTTGACACGTTTCCTGTCTTAGTCGCTTCCAGTTTTAAAGGTTTCACAACTGAAATATAGATACCTGTAGTAAAACCTTAAACATTGTGATGTTTAATACTTGTAATAACTCAGGGTTTGAGTAATTTTAGGGCTCTGACTTTCAAGTCTGGAGAATAAACTATTCTACATTGTGGATATCTATGCTCCCAGTTTGTGAGTTGAACGCATTGCTGACTTGTTATGTTTCATGATCTAATGTTAACCAGTTAGTCAACTATCTAAAaggtttaaaattaaaaaaacaaacatggccATTTGTCTGGAATTAAATTGAACTACATGCAAACGAGGACCTAAACAGACAATAATGCACAAGAAAATTTAATTTCTTAGGTATTGGCTCTGACCCTACTCTGACTTGGAAATGATCAGTGTATTCTGACCATTAACTAATCTAAATATCCCTGACACTTTGGTTTTCCTGCCTCTTCTCAAAGACCCAATCTTTTCTAACCATTGTGCAGCTGACATGCTCCAGCCTGTAGGAGTAAGTGCTCGACTGCACAAGACGTAATAATAAACGGCGAGGGGAGAAACATATAGTTCAATACTGGAAGGCATCGGCTAGAATAAGGTCACTTGGATTAAGTTAatttaaagtttgtttaaaCCTTTGCTTTTCTGAGTTGACTTCATAACTCTTAGACAGTGGATAATTTGCAAAGCAACCTATAATGGACATTTTGGAGAAATAACTTTTCATATTATCAAAGGTGCTCTTGCATCTGCTACAGTCTTTTGGTACGGACTGGGTCAGGAAGTGAAATGTCAAACCTTTGATCCTCAGGAAGAGCACCCTTCTTGTCTCAGCTCAGAATCTCCCTCTGAAACCC

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142520 lncRNA downstream 80787 19132620 ~ 19134013 (-) True G106128
TU142523 lncRNA downstream 83809 19129286 ~ 19130991 (-) False G106128
TU142463 lncRNA downstream 142058 19072063 ~ 19072742 (-) True G106085
TU142462 lncRNA downstream 143617 19070848 ~ 19071183 (-) True G106084
TU142451 lncRNA downstream 159106 19049374 ~ 19055694 (-) False G106074
XR_005640452.1 lncRNA upstream 46112 19262030 ~ 19262872 (-) True LOC120566722
XR_005640450.1 lncRNA upstream 46995 19262913 ~ 19265476 (-) True LOC120566720
XR_005640451.1 lncRNA upstream 71158 19287076 ~ 19288469 (-) True LOC120566721
TU142694 lncRNA upstream 96891 19312809 ~ 19314416 (-) True G106243
TU142699 lncRNA upstream 104345 19320263 ~ 19321306 (-) True G106248
XM_039813820.1 mRNA downstream 11699 19176247 ~ 19203101 (-) False pdgfrb
XM_039813819.1 mRNA downstream 11699 19176247 ~ 19203101 (-) True pdgfrb
XM_039813990.1 mRNA downstream 39059 19161748 ~ 19175741 (-) False LOC120567146
XM_039813989.1 mRNA downstream 39059 19161748 ~ 19175741 (-) True LOC120567146
XM_039814255.1 mRNA downstream 67773 19145238 ~ 19147027 (-) False LOC120567311
XM_039813325.1 mRNA upstream 3156 19219074 ~ 19250436 (-) False LOC120566717
XM_039813326.1 mRNA upstream 3156 19219074 ~ 19250436 (-) True LOC120566717
XM_039813328.1 mRNA upstream 3156 19219074 ~ 19250436 (-) False LOC120566717
XM_039813327.1 mRNA upstream 3156 19219074 ~ 19227660 (-) False LOC120566717
XM_039813329.1 mRNA upstream 3156 19219074 ~ 19222298 (-) False LOC120566717
TU142417 other downstream 523390 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 909105 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1222929 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1419577 17783560 ~ 17795223 (-) False LOC120567448
XR_005640507.1 other downstream 1636989 17522141 ~ 17577811 (-) False nexmifb
TU142573 other upstream 71 19215989 ~ 19219144 (-) False LOC120566717
TU142773 other upstream 264100 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 756497 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 1014990 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1911920 21127838 ~ 21130970 (-) True G106728

Expression Profile