RNA id: TU142699



Basic Information


Item Value
RNA id TU142699
length 936
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G106248
representative True

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19320263 ~ 19321306 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTGAACTTGGTGCTCTGGCCAGACAGGTAGGTGAGCAGGTAGGGGGTGGCAGGCAGAAAGGCTGGTGCCACGTTGGTGTGGGGAGAATGAGACAGCTCATGAAGACACCGAACAGCCTGCAGACGGCACGTAGCATCTGAGCCGGTGAGGAGACCAACCAGAAGATGCATACTATTCTCCTGCCTATTGATGAAGGTGAGCTGTGCTGATGGGTCGCGGAGAGCTTTACTCAAAGCTTTCAGGTGGGCCTCCCTCTCCGGCCCGCTGTGTTGAAGTTTGTGGAACAAACTGGCCACGTCCTGGGGAAATGAGGAGCAGATTCAGATGGGAACCCAAACATTATCAATCACAACGTCTGTCTCACCTGTTCCCCTGAGTAAGTGTCCATGGTGACCCCTGGCTGGTCCTCATCGTCATTCAGCAGGAGTCTCTTGCTCAcaagctgtctgtctctgcggGCTTGTCTCAGTGCTACGGCATTTAACGTAGAGAAATATTACATCACCTTCAGCAAAGAAGAAAGTCATCTGAGAGTAGCCCATTATACTTAGCTCTTCATTGTAAAGATACCCTACAAGTAGGGTTGGGCGGTATCCAAATTTTGAAACCGTCAAACCTCCTCCCTATTTTACCGCGGTATACGGTATTACCGTGACTAATTAAAAATGATGACTTGTGCACCGTTCAGAAACTGAATACCAATACTAATactgaaacaataataacaaaaaaactactttcTCCTCCACACTGTGATGTGATGACAACCACacataattacataaattatatttaatatttaatccttGCCTCCTATATAAGTGCATTGCATTTGTTTTAATGACGGTATTGAAACTGATACCGTTGctatttttaagaccccgcggtaAACCTATTGCCGATGTAATTTTAACATCATGACTAGACTAGATCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142694 lncRNA downstream 5847 19312809 ~ 19314416 (-) True G106243
XR_005640451.1 lncRNA downstream 31794 19287076 ~ 19288469 (-) True LOC120566721
XR_005640450.1 lncRNA downstream 54787 19262913 ~ 19265476 (-) True LOC120566720
XR_005640452.1 lncRNA downstream 57391 19262030 ~ 19262872 (-) True LOC120566722
TU142574 lncRNA downstream 104345 19214800 ~ 19215918 (-) True G106164
TU142713 lncRNA upstream 19188 19340494 ~ 19400495 (-) False G106259
TU142731 lncRNA upstream 73504 19394810 ~ 19395994 (-) True G106276
TU142712 lncRNA upstream 78342 19399648 ~ 19450124 (-) True G106259
TU142749 lncRNA upstream 114534 19435840 ~ 19436917 (-) False tomm5
TU142770 lncRNA upstream 155862 19477168 ~ 19497081 (-) False G106303
XM_039812734.1 mRNA downstream 15198 19301805 ~ 19305065 (-) True arsia
XM_039813322.1 mRNA downstream 37589 19277131 ~ 19282674 (-) True LOC120566716
XM_039813323.1 mRNA downstream 37589 19279936 ~ 19282674 (-) False LOC120566716
XM_039813324.1 mRNA downstream 37590 19277131 ~ 19282673 (-) False LOC120566716
XM_039813329.1 mRNA downstream 97965 19219074 ~ 19222298 (-) False LOC120566717
XM_039812548.1 mRNA upstream 10400 19331706 ~ 19334698 (-) True aldob
XM_039814361.1 mRNA upstream 44514 19365820 ~ 19373983 (-) False LOC120567398
XM_039814360.1 mRNA upstream 44514 19365820 ~ 19373983 (-) True LOC120567398
XM_039814359.1 mRNA upstream 54898 19376204 ~ 19384972 (-) False LOC120567397
XM_039814357.1 mRNA upstream 54898 19376204 ~ 19384972 (-) True LOC120567397
TU142573 other downstream 101119 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 628853 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1014568 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1328392 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1525040 17783560 ~ 17795223 (-) False LOC120567448
TU142773 other upstream 158712 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 651109 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 909602 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1806532 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2468947 21790253 ~ 21790725 (-) True G106988

Expression Profile