RNA id: TU142712


Basic Information

Item Value
RNA id TU142712
length 476
lncRNA type read_through
GC content 0.39
exon number 2
gene id G106259
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19340494 ~ 19450124 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacatacacacaaaaaaaaaaacagtaaaatcataaTTGCTAGAAAATCAGACAGGAACATTTCACTGGCTTCTGCATCTCAgttaacatttacattttggacTAACAATGCCAACAAACATGTTATCCTAACCATGTTGCTGTAGTTTCATATAGCAGACAATTTTTAGGGTCTCATTCCTGAACAGGGGGACTAAAACTAATGAAGCAAAGTTagcagtgattttttttctcatccttTTCTAAGAATTACAGGTCTGTGTCCACGACAGTGACTGCTCAGACATAGAGACCAGTCTATCCTCCTCTAAAGTGTCCTCCCTTAATCCAAAAATGTATCCTTTTCTACAAACTGTAAAATTTGAGACTCCGGTCCATTCCTGCAGAGGTGAGGAACTGAGCGTTCTCTCCAAAGGCCACTCCGGTCACCAATCCTGTATGGTCTACAATAACAAAGGCAAGGTCAAAACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142731 lncRNA downstream 3654 19394810 ~ 19395994 (-) True G106276
TU142699 lncRNA downstream 78342 19320263 ~ 19321306 (-) True G106248
TU142694 lncRNA downstream 85232 19312809 ~ 19314416 (-) True G106243
XR_005640451.1 lncRNA downstream 111179 19287076 ~ 19288469 (-) True LOC120566721
XR_005640450.1 lncRNA downstream 134172 19262913 ~ 19265476 (-) True LOC120566720
TU142770 lncRNA upstream 27044 19477168 ~ 19497081 (-) False G106303
TU142771 lncRNA upstream 45081 19495205 ~ 19557572 (-) True G106303
TU142831 lncRNA upstream 406972 19857096 ~ 19857367 (-) True G106349
TU142887 lncRNA upstream 495531 19945655 ~ 20052690 (-) True G106378
TU142872 lncRNA upstream 511830 19961954 ~ 20007579 (-) True G106367
XM_039814359.1 mRNA downstream 14676 19376204 ~ 19384972 (-) False LOC120567397
XM_039814357.1 mRNA downstream 14676 19376204 ~ 19384972 (-) True LOC120567397
XM_039814358.1 mRNA downstream 14676 19380792 ~ 19384972 (-) False LOC120567397
XM_039814361.1 mRNA downstream 25665 19365820 ~ 19373983 (-) False LOC120567398
XM_039812922.1 mRNA upstream 14347 19464471 ~ 19469408 (-) True slc25a51b
XM_039812919.1 mRNA upstream 27806 19477930 ~ 19482625 (-) True tlr1
XM_039812928.1 mRNA upstream 78298 19528422 ~ 19565877 (-) True LOC120566455
XM_039812930.1 mRNA upstream 78298 19528422 ~ 19555712 (-) False LOC120566455
XM_039812932.1 mRNA upstream 78298 19528422 ~ 19555710 (-) False LOC120566455
TU142573 other downstream 180504 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 708238 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1093953 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1407777 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1604425 17783560 ~ 17795223 (-) False LOC120567448
TU142773 other upstream 29894 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 522291 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 780784 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1677714 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2340129 21790253 ~ 21790725 (-) True G106988

Expression Profile