RNA id: TU142713



Basic Information


Item Value
RNA id TU142713
length 383
lncRNA type read_through
GC content 0.34
exon number 2
gene id G106259
representative False

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19340494 ~ 19450124 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGGCAATAGAAaagatatttcattttattgtaaaaagGTCAGAGTTGCGACAGGTAAAATAGCAAGTAATGAGAAATATACAATTggaaaaagacaaaagtttAAATGGAACAAATGAAAGAGGAAATTAAAGTGAAGGGAGGTTAAACAAGACTTTTTTTCAGAGGAGCATATATCTCATACACCAGTTTATTTTTTCGCTTAGTTGTACTGCACCTTTCTACAGATGTATTTTCATCTTACCCTAAATAGACTGTAATGAAGAAGGTCTACATTAAGAAGCAAAGCAGATTGTTGTCACACCAACTTTAGTCCCCAACAGTGTACTACAACACTTTGGAGTTGTATTCCAAGCAACTTtaaacacacacacacacacacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142699 lncRNA downstream 19188 19320263 ~ 19321306 (-) True G106248
TU142694 lncRNA downstream 26078 19312809 ~ 19314416 (-) True G106243
XR_005640451.1 lncRNA downstream 52025 19287076 ~ 19288469 (-) True LOC120566721
XR_005640450.1 lncRNA downstream 75018 19262913 ~ 19265476 (-) True LOC120566720
XR_005640452.1 lncRNA downstream 77622 19262030 ~ 19262872 (-) True LOC120566722
TU142749 lncRNA upstream 35345 19435840 ~ 19436917 (-) False tomm5
TU142770 lncRNA upstream 76673 19477168 ~ 19497081 (-) False G106303
TU142771 lncRNA upstream 94710 19495205 ~ 19557572 (-) True G106303
TU142831 lncRNA upstream 456601 19857096 ~ 19857367 (-) True G106349
TU142887 lncRNA upstream 545160 19945655 ~ 20052690 (-) True G106378
XM_039812548.1 mRNA downstream 5796 19331706 ~ 19334698 (-) True aldob
XM_039812734.1 mRNA downstream 35429 19301805 ~ 19305065 (-) True arsia
XM_039813322.1 mRNA downstream 57820 19277131 ~ 19282674 (-) True LOC120566716
XM_039813323.1 mRNA downstream 57820 19279936 ~ 19282674 (-) False LOC120566716
XM_039813324.1 mRNA downstream 57821 19277131 ~ 19282673 (-) False LOC120566716
XM_039812910.1 mRNA upstream 14173 19414668 ~ 19426862 (-) True si:ch211-203d1.3
XM_039812911.1 mRNA upstream 14173 19414668 ~ 19425632 (-) False si:ch211-203d1.3
XM_039812909.1 mRNA upstream 31821 19432316 ~ 19435195 (-) True LOC120566441
XM_039812915.1 mRNA upstream 35344 19435839 ~ 19436927 (-) True tomm5
XM_039812922.1 mRNA upstream 63976 19464471 ~ 19469408 (-) True slc25a51b
TU142573 other downstream 121350 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 649084 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1034799 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1348623 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1545271 17783560 ~ 17795223 (-) False LOC120567448
TU142773 other upstream 79523 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 571920 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 830413 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1727343 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2389758 21790253 ~ 21790725 (-) True G106988

Expression Profile