RNA id: TU142749



Basic Information


Item Value
RNA id TU142749
length 666
lncRNA type sense_over
GC content 0.42
exon number 2
gene id tomm5
representative False

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19435839 ~ 19436927 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CGTAGGCCTTCTTCCGGTTTAGATTATTTGATCCATGCTCCCGAAACGGTGAATTTTTAGCTCGAAAGGCACTCTTAAGAACAGGACCCAGTTAAACAACGATCATGTTTAAACTGGAAGGACTCGGGCCTAAAATGGACCCAGaagagatgaagaagaaaatgcGACAAGATGTCATCTCATCTTTACGAAACTTTCTTATTTACGTCGCCCTTCTCAGAGCCACCCCATATGTGTTGAAGAAGCTGGACAGCATATGAGCAAAGCAGCATGTCTCTTCTTCCGCCATCCACTGACCATTTACTCCACCAGGCCGTATGGACCGTCATCAGCAGACCCCTGGGGCCATTACAGCACATCTGTTGGAGAAGACCCGTGTCTGTCCATGCACCTGAGGAAACACCTTATCCTCATTTCTTGTTTCTTGTTGTAAACTTTAGTCTGCCTTTCAAGTTAGAGATTGTGATAAATGTAAAATGGAAAGTTTGATAGTGTGTATGCataccatgtacacacattAAAGGGAAACtgtgtttattttgttgtttttacataGCAGATCTGCTCAGTCTTGTACAGATGGAATGAATAGTTTCAAACTGCATTACAAATGTACACAGCAAGTGTTAAATCTGGAATcactggaaataaaaaaagaacaaagga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142713 lncRNA downstream 35345 19340494 ~ 19400495 (-) False G106259
TU142731 lncRNA downstream 39846 19394810 ~ 19395994 (-) True G106276
TU142699 lncRNA downstream 114534 19320263 ~ 19321306 (-) True G106248
TU142694 lncRNA downstream 121424 19312809 ~ 19314416 (-) True G106243
XR_005640451.1 lncRNA downstream 147371 19287076 ~ 19288469 (-) True LOC120566721
TU142770 lncRNA upstream 40251 19477168 ~ 19497081 (-) False G106303
TU142771 lncRNA upstream 58288 19495205 ~ 19557572 (-) True G106303
TU142831 lncRNA upstream 420179 19857096 ~ 19857367 (-) True G106349
TU142887 lncRNA upstream 508738 19945655 ~ 20052690 (-) True G106378
TU142872 lncRNA upstream 525037 19961954 ~ 20007579 (-) True G106367
XM_039812909.1 mRNA downstream 645 19432316 ~ 19435195 (-) True LOC120566441
XM_039812910.1 mRNA downstream 8978 19414668 ~ 19426862 (-) True si:ch211-203d1.3
XM_039812911.1 mRNA downstream 10208 19414668 ~ 19425632 (-) False si:ch211-203d1.3
XM_039814359.1 mRNA downstream 50868 19376204 ~ 19384972 (-) False LOC120567397
XM_039814357.1 mRNA downstream 50868 19376204 ~ 19384972 (-) True LOC120567397
XM_039812922.1 mRNA upstream 27554 19464471 ~ 19469408 (-) True slc25a51b
XM_039812919.1 mRNA upstream 41013 19477930 ~ 19482625 (-) True tlr1
XM_039812928.1 mRNA upstream 91505 19528422 ~ 19565877 (-) True LOC120566455
XM_039812930.1 mRNA upstream 91505 19528422 ~ 19555712 (-) False LOC120566455
XM_039812932.1 mRNA upstream 91505 19528422 ~ 19555710 (-) False LOC120566455
TU142573 other downstream 216696 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 744430 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1130145 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1443969 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1640617 17783560 ~ 17795223 (-) False LOC120567448
TU142773 other upstream 43101 19480018 ~ 19482558 (-) False tlr1
TU142874 other upstream 535498 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 793991 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1690921 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2353336 21790253 ~ 21790725 (-) True G106988

Expression Profile