RNA id: TU142770



Basic Information


Item Value
RNA id TU142770
length 1235
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G106303
representative False

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19477168 ~ 19557572 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TACTGATTGAACATTGTTGCCAGGTAGTTTCTCGTTATTGTATTTTCTAGGTGGAAAATTATTCCAGTTAAGAAATGTCACATAGCTCAGCAAAGGCATGTCACAGAAAGGACACAGTGTGGATTAATTTACACAGACTTTAATATCTTTATTTACAGATGAatcatttttgacattttttatctgTTGGCGTAGTTAAGATGATGCAATATTTTTCAAACGCTTTTCGAATATTTCCGTCCAGACTTGTGACAGGTTGTGTTACTGTTCAACATgtctttcttgtttgttttgttttctttcagtttAAAAACAAGAATCCAAATGTATTCCTGCAGGACgccaaaatcaaataaaacttttaaaaaatgtgagGAAAGGGACAGGTGAAGTAAGCAATGTCAAGAACAGGTGTGGGGATAAGAGCTGGGGTTCGCTGCAGGTTTGAATTGAGAcagctgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagggggggggggaaccactgctttaacACATGAGCATACTTTATTGAGCTAATTTTCAATATTGTACTATGAACTGACTTATTGTAAGCTTGTAAGACATGAATCATATCGCAACTTCTTTAAACCTTTTAGAGGGCATTTAATTGAAACATTTATATAAACTAACACTTCAAGtttgtaacaaaaaaataaaccttACCCAAGAAATCAAAATGCACTTAATTCTTTTTGTCAATACTGGCTCCCACAAAATGTCACAATATGATTAAACCACTTCAAATGTAGTTGAGCACATGTTGAAAAGAAAACTACACACATACTACGAAAACTGCATGAGCGCTGTATATTCAGAAAAACAGTATTCTCTCCAACTCTCTAAAAAGAGAGGTCAACTTTTGAGGCAAGGAGAGGTATTCTTTTCGGAAGAGTTCAGAGATGGATGATAAAGACGAGAGAGCTAGACGTGTGCCCTGTGTTGGAGTCATGAAGTCAGTCCAGCTGCATTAAAACTGTGCCTGGAATATCAACTATGAAAAGGTTCAAAAGTCACAGGCCACGTGTCAAGGAAGAGActggatgatgatgattttcTCATTAATGCAGAAACGGTGAAGGACACTGTACAGGTTCTCTCCGCAACGCGACACCTGCCTCTCCATGGCCAGGCGGAAATCTTCCTTCACTCCTTTGGTGATTCCACGAGTCACTGTGTGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142712 lncRNA downstream 27044 19399648 ~ 19450124 (-) True G106259
TU142749 lncRNA downstream 40251 19435840 ~ 19436917 (-) False tomm5
TU142713 lncRNA downstream 76673 19340494 ~ 19400495 (-) False G106259
TU142731 lncRNA downstream 81174 19394810 ~ 19395994 (-) True G106276
TU142699 lncRNA downstream 155862 19320263 ~ 19321306 (-) True G106248
TU142831 lncRNA upstream 360015 19857096 ~ 19857367 (-) True G106349
TU142887 lncRNA upstream 448574 19945655 ~ 20052690 (-) True G106378
TU142872 lncRNA upstream 464873 19961954 ~ 20007579 (-) True G106367
TU142882 lncRNA upstream 543016 20040097 ~ 20055141 (-) True G106375
TU142883 lncRNA upstream 553731 20050812 ~ 20055141 (-) False G106375
XM_039812922.1 mRNA downstream 7760 19464471 ~ 19469408 (-) True slc25a51b
XM_039812915.1 mRNA downstream 40241 19435839 ~ 19436927 (-) True tomm5
XM_039812909.1 mRNA downstream 41973 19432316 ~ 19435195 (-) True LOC120566441
XM_039812910.1 mRNA downstream 50306 19414668 ~ 19426862 (-) True si:ch211-203d1.3
XM_039812911.1 mRNA downstream 51536 19414668 ~ 19425632 (-) False si:ch211-203d1.3
XM_039812928.1 mRNA upstream 31341 19528422 ~ 19565877 (-) True LOC120566455
XM_039812930.1 mRNA upstream 31341 19528422 ~ 19555712 (-) False LOC120566455
XM_039812932.1 mRNA upstream 31341 19528422 ~ 19555710 (-) False LOC120566455
XM_039812931.1 mRNA upstream 31341 19528422 ~ 19555710 (-) False LOC120566455
XM_039812926.1 mRNA upstream 33039 19530120 ~ 19569097 (-) False LOC120566455
TU142573 other downstream 258024 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 785758 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1171473 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1485297 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1681945 17783560 ~ 17795223 (-) False LOC120567448
TU142874 other upstream 475334 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 733827 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1630757 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2293172 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 2622604 22119685 ~ 22120067 (-) True G107015

Expression Profile