RNA id: TU142773


Basic Information

Item Value
RNA id TU142773
length 803
RNA type TUCP
GC content 0.47
exon number 2
gene id tlr1
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19477930 ~ 19482625 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTAGCGCTGTTATTTACTGTAACAGCAACAAAGGTTgtgtcagaaaaacaaataagaaGAACAGAAGCATTTAACTGGCTACAAATCTGGTGATTGTCATTTGATCCAAACTGTTTTTGATTGTTGGTGCATTTTTTTGTTAGAGATATTTTTGTAGACTTAAAGACTGAGCGCAGATACCTCCGGCTGTTTACTGAGACTGTCTACAACATATTAAGCTGCGGTGTTTCTGCTGAAATACCCATCGGACCTTAATACAGGCAAACAATGAGGCCTGTGACCGCTGCCCTCTGGGTGGCAGCCATGTTGATGGGACTCAAGTTGAGCGGTTCATACCCTGACAGCATCGTAGATCGCTCATCCAAAAACCTCTCCTTTGTCCCGAGAGACCTGCCACAGACGGCTGAGTCTGTAGACCTTTCATGCAACCGCATACAGAAACTCCACCGAGGAGACTTCAAAAACACCTCCCTCCTGAGGTTCCTCAACATTTCTTGGAATAGTTTGGATGACATCGACCCAGGAACGTTCCTCGACACGCCGCTCCTGGAGGATCTAGACCTGTCACACAACAGACTGAGGAACCTGTCGGCTCAGCGGTACCTGCTCCACACGGAGAACCTTCTGGTGCTAAATTTGGCCTGCAACAGGTTTCTCACCATGACACTGGGGAAGGAGTTCAGTTCCCTGGTAAAACTGGAGAGATTAGCACTTGGAGCGCAAAACATCAGTGCGGGTGATTTCAAGAATATTGCTGAAGTGAAACTGCGTACGCTGACCCTTTCCCTGGAGAATGAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142712 lncRNA downstream 29894 19399648 ~ 19450124 (-) True G106259
TU142749 lncRNA downstream 43101 19435840 ~ 19436917 (-) False tomm5
TU142713 lncRNA downstream 79523 19340494 ~ 19400495 (-) False G106259
TU142731 lncRNA downstream 84024 19394810 ~ 19395994 (-) True G106276
TU142699 lncRNA downstream 158712 19320263 ~ 19321306 (-) True G106248
TU142771 lncRNA upstream 12647 19495205 ~ 19557572 (-) True G106303
TU142831 lncRNA upstream 374538 19857096 ~ 19857367 (-) True G106349
TU142887 lncRNA upstream 463097 19945655 ~ 20052690 (-) True G106378
TU142872 lncRNA upstream 479396 19961954 ~ 20007579 (-) True G106367
TU142882 lncRNA upstream 557539 20040097 ~ 20055141 (-) True G106375
XM_039812922.1 mRNA downstream 10610 19464471 ~ 19469408 (-) True slc25a51b
XM_039812915.1 mRNA downstream 43091 19435839 ~ 19436927 (-) True tomm5
XM_039812909.1 mRNA downstream 44823 19432316 ~ 19435195 (-) True LOC120566441
XM_039812910.1 mRNA downstream 53156 19414668 ~ 19426862 (-) True si:ch211-203d1.3
XM_039812911.1 mRNA downstream 54386 19414668 ~ 19425632 (-) False si:ch211-203d1.3
XM_039812928.1 mRNA upstream 45864 19528422 ~ 19565877 (-) True LOC120566455
XM_039812930.1 mRNA upstream 45864 19528422 ~ 19555712 (-) False LOC120566455
XM_039812932.1 mRNA upstream 45864 19528422 ~ 19555710 (-) False LOC120566455
XM_039812931.1 mRNA upstream 45864 19528422 ~ 19555710 (-) False LOC120566455
XM_039812926.1 mRNA upstream 47562 19530120 ~ 19569097 (-) False LOC120566455
TU142573 other downstream 260874 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 788608 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1174323 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1488147 17987258 ~ 17991871 (-) False sfxn1
TU142030 other downstream 1684795 17783560 ~ 17795223 (-) False LOC120567448
TU142874 other upstream 489857 19972415 ~ 19981133 (-) False fgf18a
TU142968 other upstream 748350 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1645280 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 2307695 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 2637127 22119685 ~ 22120067 (-) True G107015

Expression Profile