RNA id: XM_039814418.1


Basic Information

Item Value
RNA id XM_039814418.1
length 4056
RNA type mRNA
GC content 0.49
exon number 5
gene id fgf18a
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19971833 ~ 19981633 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggagggaagattGATCCGCGTCTGTTAAAATCTTGTTCTGGTTTTTCTTGGAGTGAGGTCTGTGCCTGCCGACGCGCCTCTCCTATGCAGCCCCCTCAAGAAGAGCTTTTTATGGAAGAAAACCTTGGCATTTTTGAAAGCAAGAAGCTGCATTATACCAGTGaagtggataaaaaaaaacgcaCGACTGGGTTCCTTTTGCGTTCTATCTTGCGTTTTCTCCTCTGGTGTCTGAATGAAACAGGGAGGCAAACATAAGGGAACGAGGGACGGTGCAGGTTCTGATCTGGGAGTTGATCTGTCAGTGTGATTTTGGGTAGACACGTTTCCAGTGCGCacgttttaacttttatttcttCAGAAACTGGTGAGCTCGACTCCTCTCTTGCACCACGGAGTTCGCTTTTCTCGGAACGAGGAGACTTTCGTGTTTTTTTCGTCTTCGGAGAAACTGCTTAAACTTTctacgtttaaaaaaataaataaaaagatcgGATTGCATTTTCCCCCTTCAAACATTTTTGAGGTGATGTCATCGTGCTGTGTTTTGGCTGGTATTGTGTCGAGAGGGCGCAGGGAGGACTACTGCAGCCAGGCGGTTACCAGCGGCTGAGGCAAGCGGGGAAGTCCGGAAAATCAGGTGCAAAGTGCGGCTGTCATTTCCTCGCTGTGTCGCGGGAGGCTGAGTCCGCCACCCAGTCACAGCTGTCCCCATCCTCTCCAGCCACCCCTCCCTCGTCTTTATTATCCAATTTTCATTCAGCACTCTCCATATACCCCTCTGAGCTGGACCTCTCCGGGACCTTATCACCCTCTCTGTTGGACACTGTTGGTCGGTGTTACCTGAGCCACAGACCCGTTAAGCCAGCGTGGGGGCGCAGTCATGACCGAGGCAAACTTGCATTACCCTGCGCCCGCAGAGCCCCCGTCTCCAGCTCGCCGTTTGCTCCATCAGCCAGCCCAGGTAGCCCACCTCCATCAGCTCCTGACCCTGCTCTGCTGGGACTGAACCTGCCTGCTACTCCTGCCTGTGTCGGAACAAACACTCCACTTTCTGTTATCATCTCACCGACTACAGAAATTATTTTGGTGACCAGAAACTTGCTGTTGCGCTGAAACGTTACGCATTGGATTACGCAGAAGATTACGCCCGCACCGCATCTGTCCACAGGGCCGAGCATCACTCTGAGGGTCAACAAGGTCGATTGCAGTTGGTTATCTTTGACGCGTGAGCGCGCTTTCACCTGTTCCTCTCCTTGTCGAGGACGCGCAGTCTTTAAAGCCCTGACCTTCCCCCTTTGCTACCCCGCCCATTCGTCTCTCCACCGGTCTGGACAGCTGTTAGAGGTTGCCCGGCGGTCACAGTGGCACAGTTACCCCGGCCTCGCACCCCAAATTGCCCGCGCCCGCACATTTACCCACACCGGGAAAACCTGGGCACGCCGCCGCCGATGCCAACGGGAGTGTCCGCTGACTCTTTGACTCTGCACTACATACAGCGGATTCAAAACACAGAGGGGAACTCTCCGGAGTGTCGGACTGGCCCAGACCGAGCGAGGAGACTGTCTCAGGGACAAGTTCCATAGTGGAGGGGGGAAGCAATGTGGCCCCTTCTTTCCACGCTGACCGTATTATGTATCCAGATGTTGCTGGTGATGTGCAATCCATTACAGCAGGTACTTGGTGTGGATGGGGTCAACTTCAGTGTGCATGTGGAGAACCAGACGCAGGTGCGAGACACCATGAGTCGGCGACACCACCGGGTCTACCAGCTCTACAGCCGCACCAGCGGCAAACACGTCCAGGTGCTAGGACGCAAAATCAGCGCTCGAGGAGAAGATGGAgacaaatttgCCCAGCTCGTAGTGGAGGCCGATACCTTTGGTAGCCAGGTGAGAATCCGGGGCAAAGAAACCAATTTCTACCTGTGCATGAACCGCCGCGGCAAGCTGGTAGGAAAGAAGGCCAGTAATCGAAGTGATGACTGCGTCTTTGTGGAAAAGGTTCTGGAAAACCACTACACAGCTCTGATGTCAGCGCGCTACACAGGCTGGTATGTTGGCTTTACTAAAAGAGGGCGTCCTCGCCGTGGCAACCACACTCTCCCCAACCAGCAGGATGTACACTTCATGAAGCGCTTCCCGCCTGGGGAGCAGCCCGACCTCACCACCCCCTTTCGCTTCACCACCGTCAGCAAGCGGGGCAAGCGGGTGCGTGCTACCGGGCCCCGCTAGTAGTGGCTAATGCTAACACCCGCTATCTTGTCATCTAAAGCCTTTACCGGAGCCTACCAATGGCTAACCCAATCATCTCCTCTGTCACACACGACTGAACACCTCCCTTCATTGGGACAAACATTGACCAGAAACTTGATGAATCATTCATGGGGTTTAGCTTTACACTTACTAATTTGCCACTAGTTAGTGATCATTCCTCTCAATTTTAGTTCCCTTACTGGACTAACTGGACCATTACTGGACTGGTCCATCGCTGGAAGCTCTATGGACCTACTCTGCTTCCCTTCATAGGCCAGAAATACTGACAGGGAACCTGAAGGGCAGCCAGAGTCCTAGGCTCTACGAAGGCCTTTATTCTACAACCACAAGGCCTTCATGTCTCCTTTTCTGGACCAGCTGGACAATGTCAAGTATGGGATTACAGCTGGACcatacagagagagaacaaGGGTGGGAAAGACTGACTGAACAAGAGAGTGGGTGCTTAGCCTACGgataaagggaaaaaaggaagaagacaGGAAAACGGCAGAGTGGACAAAGGGATAGAGTGATCTGCACACATCAAATGGACCAATAATGGACTGTTGACATGTGACACACTTATTTTTGTCTCACTGCTAAAGTGGTGTGAACCTGTGAGACTGTtggatgaatggatgacatAAAGATGAATGAGGGGATGATCGAGCAAGTGACTTACTGAATAAATGCATATTTGTAAGAAGACGACGAAATGtatgtaagagtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcgagtgAGTGCATCAACAACCATGAGTGAAGCTGGATCACGAGGGACTCCGAAAAGGGACCATCCAGTCCTGCATGAACCTGTGACAACTCACCGCAGGGACTGAAGCTTTAGGAACTGGAATGTATAAAAACCAAGCTGCACCAAAAAcagccagccaatcacagcaaaCCAAACCAACGACTGACCAaagacaaccccccccccccaggacaCTCTCAACTTATAGGTGCAGAGGATGAAGAGCGCAGGGGCGAGGACGGCGGGGAGGGTGCCTTGTCTATTAGCATTGCTATAGAAACGACCCAGGGGATGATGCTCCCGTGCGATACCGTGGATACAGAATGCTGCTACCAGGACATTCAGTGGAACAAACCAAAGTCTCATGTATACACACAGGGGAAAAAATATTAAAGGGAACAATTTATTGAAagctatatatattatatatataaaagaagaCAGAAACCCTAAATAAGCAATCTTACtatgatggttattataattattacgataaaattatttcatttatttatttcagctcTGTGTGCAGCAGTCTTTCTCGACTCAGTAAACCTTACAGAAACATTTCCTGTGTCTCCCAGCATCTTTAAACTGCTTCTCCACCTGCTCGATTTTCTGTCAAGGATTATATTGTAGAAAGAGATTCAAGTTTGTGATGTTGTGGGCTGGCTTTTTTGCTCAATTAGTTGATCGACAAAAAAATAACtggaaactattttgataattaataATTGTAAGTCATgtatcaagaaaaaaaaagcccaacatTTGCTTGTTCCAGCCACTGTAATATGAGTGTTTTGATGGTATTCTCTGTTTTGTAGCACTCTAAAtggaatatatttgggttttagactgttggttaaacaaaacaagcaaactGAAGCAATTGCTTTGGGCTCAAAGAAATTGTGATACGCAGTAGAGTTGGGCATTATAATGATATGTACCATGATGCAATATACATTTGTCAACCATTA

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142831 lncRNA downstream 114466 19857096 ~ 19857367 (-) True G106349
TU142771 lncRNA downstream 414261 19495205 ~ 19557572 (-) True G106303
TU142770 lncRNA downstream 474752 19477168 ~ 19497081 (-) False G106303
TU142712 lncRNA downstream 521709 19399648 ~ 19450124 (-) True G106259
TU142882 lncRNA upstream 58469 20040097 ~ 20055141 (-) True G106375
TU142883 lncRNA upstream 69184 20050812 ~ 20055141 (-) False G106375
TU142939 lncRNA upstream 98418 20080046 ~ 20092084 (-) True G106414
TU142951 lncRNA upstream 174708 20156336 ~ 20160484 (-) True G106426
TU142953 lncRNA upstream 198590 20180218 ~ 20182153 (-) True G106428
XM_039812992.1 mRNA downstream 220126 19741886 ~ 19751707 (-) True LOC120566486
XM_039813054.1 mRNA downstream 244542 19723502 ~ 19727291 (-) True LOC120566528
XM_039812996.1 mRNA downstream 273066 19598361 ~ 19698767 (-) False spock1
XM_039813132.1 mRNA upstream 604354 20585982 ~ 20699203 (-) False LOC120566601
XM_039813131.1 mRNA upstream 604354 20585982 ~ 20699203 (-) True LOC120566601
XM_039812634.1 mRNA upstream 719914 20701542 ~ 20703679 (-) True LOC120566290
XM_039812559.1 mRNA upstream 734199 20715827 ~ 20770031 (-) True trpc7b
XM_039814436.1 mRNA upstream 832850 20814478 ~ 20834647 (-) True dock2
TU142773 other downstream 489275 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 752689 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 1280423 18687788 ~ 18691410 (-) True LOC120566257
TU142254 other downstream 1666138 18303269 ~ 18305695 (-) False reep2
TU142092 other downstream 1979962 17987258 ~ 17991871 (-) False sfxn1
TU142968 other upstream 249280 20230908 ~ 20233924 (-) True G106443
TU143328 other upstream 1146210 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 1808625 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 2138057 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 2709532 22691160 ~ 22692831 (-) True G107117

Expression Profile