RNA id: TU143018


Basic Information

Item Value
RNA id TU143018
length 447
RNA type TUCP
GC content 0.46
exon number 1
gene id G106465
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20351721 ~ 20352167 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTCTGCCACCTGTTCCATGTATTTACTTATTTCTGATAACTTGGCTGAGGTGCCGGAACTGAAGGATATTTCATATGATGAGAAGAACTCCAAACTGACCTCTTACCTGATCATCGCGCTGGTGTCTGTGTCCACCTTTTTTCTGACCTTCATTATCATCATCCTGGGTGTGAGGTTTTGTCGCAGTAGAAAGCCCAGACTGTTGTTTGATGGAGCGGTTGCCATCCCCAGCGCTTATCTCCCTCCTAATTACGCAGATGTTGACGGCACAGGAACTTTACGCAGCGCTTACAATTATGACGCCTACCTGACAACAGGTTCTAGAACCAGTGACTTTAAGTTTGTGACGTCTTACAATGACAACACACTGCCTGCTGACCAGACTCTGAGGAAAAGTCCATCAGACTTTGCTGAAGTGTTTGGAGATTGTGATGTCTCTCCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640536.1 lncRNA upstream 75810 20273833 ~ 20275911 (+) True LOC120567249
XR_005640570.1 lncRNA upstream 352920 19973785 ~ 19998801 (+) True LOC120567444
XR_005640569.1 lncRNA upstream 352920 19973785 ~ 19998801 (+) False LOC120567444
XR_005640458.1 lncRNA upstream 396758 19950757 ~ 19954963 (+) True LOC120566743
TU142833 lncRNA upstream 410006 19940938 ~ 19941715 (+) True G106351
TU143143 lncRNA downstream 358342 20710509 ~ 20731673 (+) True G106577
TU143189 lncRNA downstream 594663 20946830 ~ 20947415 (+) False hrh2a
TU143269 lncRNA downstream 748317 21100484 ~ 21100835 (+) True G106679
TU143274 lncRNA downstream 755331 21107498 ~ 21108359 (+) True G106684
TU143303 lncRNA downstream 840899 21193066 ~ 21194849 (+) True G106707
XM_039814311.1 mRNA upstream 13434 20335723 ~ 20338287 (+) True LOC120567352
XM_039814126.1 mRNA upstream 72422 20276737 ~ 20279299 (+) True LOC120567211
XM_039814067.1 mRNA upstream 95308 20103023 ~ 20256413 (+) False LOC120567189
XM_039814059.1 mRNA upstream 95308 20108685 ~ 20256413 (+) False LOC120567189
XM_039814064.1 mRNA upstream 95308 20118144 ~ 20256413 (+) False LOC120567189
XM_039814106.1 mRNA downstream 4182 20356349 ~ 20509843 (+) False LOC120567191
XM_039814108.1 mRNA downstream 4184 20356351 ~ 20393565 (+) False LOC120567191
XM_039814077.1 mRNA downstream 4212 20356379 ~ 20554612 (+) False LOC120567191
XM_039814078.1 mRNA downstream 4212 20356379 ~ 20554612 (+) False LOC120567191
XM_039814092.1 mRNA downstream 4213 20356380 ~ 20554612 (+) False LOC120567191
XR_005640374.1 other upstream 290383 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 745948 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 2458191 17890967 ~ 17893530 (+) False gabra6a
TU141898 other upstream 2666022 17682919 ~ 17685699 (+) True G105677
TU141805 other upstream 2991460 17357929 ~ 17360261 (+) False LOC120566324
XR_005640584.1 other downstream 1096637 21448804 ~ 21461450 (+) False stx3a
TU143990 other downstream 2510023 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 2602805 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 2906104 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 2916624 23268791 ~ 23270216 (+) True G107333

Expression Profile