RNA id: TU143304


Basic Information

Item Value
RNA id TU143304
length 476
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G106708
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21196179 ~ 21196654 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCCTCGTGATCCAGCAGCTGCTTCTCCATCTGCGTGGGATGAATTTCACATGTGTTGCAAACTGGAAACGCCGAGACACTTTCACGTCCATGTACAACCCTCGTGTGTTCCTTCGACAtgtcacgcacgcacacacacggcagCTATCCTTCTCAGCATGTGTAACCGGAGACCACAGCAAAGCTGAGAAAGTCAACACTTAACTGTGCTGAGGTGTACGCCGTGTTTGCAAATTAATAGTCACGCAGAAAATGAACCTGACCACAGTTTAAAAGTTTGGAAATTAATGAGTTTGTAacgagtttaaaaaaaaaaaaaaaataggttgcGACACAAATTACTTAACAGATAACGAGCCTTTGCAATTAGAGACTCCAAAATGGAGGACATTGATGTTAGAGAGTGAATATCTGAAATAGTGTCAAGTTTGTGCGTTTGCCATTTGCCTTAACAAGAAGGAGAGGATGAAATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143303 lncRNA upstream 1330 21193066 ~ 21194849 (+) True G106707
TU143274 lncRNA upstream 87820 21107498 ~ 21108359 (+) True G106684
TU143269 lncRNA upstream 95344 21100484 ~ 21100835 (+) True G106679
TU143189 lncRNA upstream 248764 20946830 ~ 20947415 (+) False hrh2a
TU143143 lncRNA upstream 464506 20710509 ~ 20731673 (+) True G106577
TU143305 lncRNA downstream 150 21196804 ~ 21199268 (+) True G106709
TU143306 lncRNA downstream 150 21196804 ~ 21202170 (+) False G106709
TU143312 lncRNA downstream 8035 21204689 ~ 21205376 (+) True G106712
TU143384 lncRNA downstream 83060 21279714 ~ 21283212 (+) False selenoh
TU143385 lncRNA downstream 83060 21279714 ~ 21283212 (+) False selenoh
XM_039813191.1 mRNA upstream 13629 21179991 ~ 21182550 (+) True LOC120566636
XM_039813183.1 mRNA upstream 22408 21158895 ~ 21173771 (+) False cabp2b
XM_039813184.1 mRNA upstream 22800 21166135 ~ 21173379 (+) True cabp2b
XM_039813185.1 mRNA upstream 22800 21166267 ~ 21173379 (+) False cabp2b
XM_039813179.1 mRNA upstream 41351 21146681 ~ 21154828 (+) True LOC120566628
XM_039813942.1 mRNA downstream 45800 21242454 ~ 21259046 (+) False slc43a3b
XM_039813940.1 mRNA downstream 49068 21245722 ~ 21259046 (+) False slc43a3b
XM_039813939.1 mRNA downstream 49074 21245728 ~ 21259046 (+) False slc43a3b
XM_039813936.1 mRNA downstream 49122 21245776 ~ 21259046 (+) False slc43a3b
XM_039813937.1 mRNA downstream 49125 21245779 ~ 21259046 (+) False slc43a3b
TU143018 other upstream 844012 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 1134841 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 1590406 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 3302649 17890967 ~ 17893530 (+) False gabra6a
TU141898 other upstream 3510480 17682919 ~ 17685699 (+) True G105677
XR_005640584.1 other downstream 252150 21448804 ~ 21461450 (+) False stx3a
TU143990 other downstream 1665536 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 1758318 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 2061617 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 2072137 23268791 ~ 23270216 (+) True G107333