RNA id: XR_005640392.1



Basic Information


Item Value
RNA id XR_005640392.1
length 593
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120566356
representative False

Chromosome Information


Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21070141 ~ 21073913 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGCAACTATGCACATTTGGTGTCATGTGACCATACATTCTGAAGGACTCCATCATTTCTATTCTGCTGTGAACAACAACTGGAAAGAGAAGTCGAGGTTGGTTCAAGAACTTTATGGCACGCCACCATCTCTCCTGTCGTATGCCTGAAGCAACATCTTTGGGAAGAGCTACAGCCTTCAACAAATACAGTCGGGGAGTTCTTTGACAATCTGACCAAAGTGATGGACAGGTTTAAATTCCCTCCAAACATCCCCTCCCCTGGATATGTCTCCCACTGAAATTATACCCTTATCCAAAAGTCAGCAGCCTAGGgcacagacaaagagaaagtGGGTGAAGACAAGGATACTGACTGATACACCTGAAAAGCAGGCAAaagaaatggaacatgaaaagaaagaaaaaacaaactgaaggGGAAACAAGTAACCAACATCAAAGAATAACGAAAGTCCAAGAAGAAACAAACCCAGGAAGAAGTTACAGTGTCCAGCAGCTCTGAGGAGAGTGATGATCCCATCCCACTTGATGACACTTCTGATGCTACGTTTATAcatggccggctattttcataaacggacatttcaacctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143225 lncRNA downstream 70415 20999959 ~ 21000211 (-) True G106645
XR_005640582.1 lncRNA downstream 109734 20955337 ~ 20960892 (-) True LOC120567470
TU143211 lncRNA downstream 123053 20946038 ~ 20947573 (-) True G106632
TU143210 lncRNA downstream 127033 20941531 ~ 20943593 (-) True G106631
XR_005640524.1 lncRNA downstream 509282 20560020 ~ 20561344 (-) False LOC120567131
TU143341 lncRNA upstream 29688 21101252 ~ 21104974 (-) False LOC120566885
XR_005640437.1 lncRNA upstream 78338 21149902 ~ 21164063 (-) False LOC120566633
XR_005640436.1 lncRNA upstream 88777 21160341 ~ 21164063 (-) True LOC120566633
TU143360 lncRNA upstream 108421 21179985 ~ 21182700 (-) False LOC120566634
TU143417 lncRNA upstream 181341 21252905 ~ 21256647 (-) True G106784
XM_039813576.1 mRNA downstream 16683 21025365 ~ 21053943 (-) True jakmip1
XM_039813575.1 mRNA downstream 45653 21009715 ~ 21024973 (-) False LOC120566893
XM_039813574.1 mRNA downstream 45653 21009715 ~ 21024973 (-) True LOC120566893
XM_039814446.1 mRNA downstream 81793 20963389 ~ 20988833 (-) True LOC120567468
XM_039813562.1 mRNA upstream 4193 21075757 ~ 21110067 (-) False LOC120566885
XM_039813563.1 mRNA upstream 4193 21075757 ~ 21104982 (-) True LOC120566885
XM_039813564.1 mRNA upstream 4193 21075757 ~ 21104981 (-) False LOC120566885
XM_039813565.1 mRNA upstream 4193 21075757 ~ 21104981 (-) False LOC120566885
XM_039813561.1 mRNA upstream 4193 21075757 ~ 21104981 (-) False LOC120566885
TU142968 other downstream 836702 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1089493 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1588068 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 1851482 19215989 ~ 19219144 (-) False LOC120566717
TU142417 other downstream 2379216 18687788 ~ 18691410 (-) True LOC120566257
TU143328 other upstream 56274 21127838 ~ 21130970 (-) True G106728
TU143775 other upstream 718689 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 1048121 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1619596 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1919423 22990987 ~ 22993229 (-) True G107235

Expression Profile