RNA id: TU143360


Basic Information

Item Value
RNA id TU143360
length 1353
lncRNA type sense_over
GC content 0.52
exon number 6
gene id LOC120566634
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21178852 ~ 21187653 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGACTGTCACTTTTTCCCCCACTGTGAAAACTTTCACAATGAAAACTCATTGCAACCACAACCCCTGTTCTCTGTGAAGAGAAAAACTACGTTTACAGGCACCTTTTAAACCCTGCATATTTTATATAGACTAATAAAACAAGATTAGATGAAGTGAAAATTAGTTTATTAGTTATCAACCTcctacacaacaacaaaacacatctGAGCTGCACTGAGGAGACCTGGCCGGGACGCCATGCTGTAGCTTCATCTCCCCTCTGTTTGGATCCAGCGCACTGAAGAATTGCTCTAGTCGTCGCCCAGCTCAGGTGAGGAGTACAgcgcaggtgtgtgtgagtgtgtagggACCTCCAAACCAAATAAAAAGACACTGTGTGAGTGTCCGTTATGTCagcaatgtgtttgtgtggagcGTGTGTTTCCCTGTGCTTTAAAAGTGCGATATTGTCTTTTATCACACTCTGGCTGCGGCTGTAAATCAGTAGTGGTGTTGGGGCGGCTGTTGCGGCTCAAGTCAAGAGGAAGGAAAGGATtgaagagagaaggaaagaaagaggaagggggtTTAGGGTGAAGGGAGTGGGGTCGAGGGGGAGCTGCTGTCTCAGTCTCAGCCTGTTGTTCTCTCAGTGCTGGATGCGCCTGATGGACTGGATCTGGGGGGTCTGGCAGTGGGAGCCCCAGTTCCTCCAGTGCTGGTAGTCTCCACTGTGTCTCTCACACTCCATGATGTACTGCTGGCCCCTGTAGCCAGGGTGCTGGTAGCACACAAAGGCGCCGCACTGCACGTGCATGGAGCCAACTTCAGGCATCATCCAGCCCATGGCCTGCAGAGAGGGGTAGTCGTCACAGATCTCCACATTGCGGCCCATGAAGTTCTCCCTCTCAAAGATGATCATGCGGCTGCTCTGGTGGGAGGCGCAGTAGATGGGGCGCAGAGACATGAGGCGCTCCACATGGTAGGAGAGGGAACCGCTGTAAGCGTCCCAGTGGGGGTACTCTCCTCTCTCCAGGATGAACTGCTGCCCCTGGAAGTCATGGTGCTCAAAACCCACCCAgGCTCCGCTCTCCACCCTGATGGAGCGGATGTTGTCCAGTCCGCAATCCTGAATGTTGCAGCACTCAGAGGTGAACTCCAGGCACTTGCCCTGGAAATGCTCCTGCTCGAACACAGTCACCTTGAAGAAAGGAGCCATGCCCATTCCTGAGTTGACCAGCGGTTGCATCATTGGGGACCTTGTAGTTCTGTACATCTTTACTCCTAGATTGGCACTTTATTGGAAGAGTTCGATAGTGGTACGCGCCTACGGCCTGCCTCGCGTAGAGCTTTGAGAGAACCTGGCGCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640437.1 lncRNA downstream 15922 21149902 ~ 21164063 (-) False LOC120566633
XR_005640436.1 lncRNA downstream 15922 21160341 ~ 21164063 (-) True LOC120566633
TU143341 lncRNA downstream 75011 21101252 ~ 21104974 (-) False LOC120566885
XR_005640389.1 lncRNA downstream 106903 21070626 ~ 21073082 (-) True LOC120566356
TU143417 lncRNA upstream 70205 21252905 ~ 21256647 (-) True G106784
TU143431 lncRNA upstream 103614 21286314 ~ 21287781 (-) True G106793
TU143444 lncRNA upstream 129663 21312363 ~ 21314127 (-) True G106802
TU143459 lncRNA upstream 177616 21360316 ~ 21408289 (-) True G106813
TU143475 lncRNA upstream 206912 21389612 ~ 21401183 (-) False G106825
XM_039813190.1 mRNA downstream 1213 21176882 ~ 21178772 (-) True crybb1l1
XM_039813060.1 mRNA downstream 41547 21136616 ~ 21138438 (-) True LOC120566535
XM_039813186.1 mRNA downstream 48983 21128711 ~ 21131002 (-) True mif
XM_039813178.1 mRNA downstream 51425 21121202 ~ 21128560 (-) True LOC120566627
XM_039813177.1 mRNA downstream 52826 21121202 ~ 21127159 (-) False LOC120566627
XM_039813061.1 mRNA upstream 4912 21187612 ~ 21196664 (-) True LOC120566536
XM_039813192.1 mRNA upstream 14065 21196765 ~ 21219431 (-) True LOC120566637
XM_039813193.1 mRNA upstream 14065 21196765 ~ 21219430 (-) False LOC120566637
XM_039813194.1 mRNA upstream 14065 21196765 ~ 21219430 (-) False LOC120566637
XM_039813198.1 mRNA upstream 14065 21196765 ~ 21219429 (-) False LOC120566637
TU143328 other downstream 49015 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 946061 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1198852 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1697427 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 1960841 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 607553 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 936985 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1508460 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1808287 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1947009 23129709 ~ 23134785 (-) True G107284

Expression Profile