RNA id: XM_039813188.1


Basic Information

Item Value
RNA id XM_039813188.1
length 2622
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC120566634
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21178852 ~ 21187653 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGCAGGCTGCAGAAATTGTTCCTGCAGAGGTGGGGGCTGAGGGCATCCATGACGGGTCagggtggaggagctgcaggcAGGAAGTTGTACCTGAAGACCAGAGAGCTTCTGAAGCCAGCCAAGGGGAAAAGAGGACGCAGCAAAGTGTGGGAGTTCAGCCAGAGTGGAGATGTGCCGCCGTACGGTGAGGGAGGAGGTAACACGCAGCGTGGGGGGAGGAGTACAACGCAGCAGTTTAACCAGGATGGTCTTCCTGTTGGCAGAGGTCGGAGGGCGAGGGCCAAACCAACAACATCGGTTTCCTTTTCTTCCCCTCGCTTCACATGCTCCAGCGCTCAAATCTTATCTGCATTCAGCCCCGCCCTACAGCCTTCTCCATCACCTGGCCTGCAGTCTGCAGCCTCTTCATGCCTCCTCCACagcacctccctccctcctccaacTCATGAGGATCATCCCGAACACTTTGATCGTCTGCTGGAGGAAGTGATGATGGGCCTCGACATTTTACCAAACAATGACGACGGTGCTCCGCATTCTCAGCCTCCTCTTCCAACCAGAAGCAGCCGTTATGCCTATGGCTCCTGTGGCAATACTTTGgcccaaaacaaacaacaaggcTGTACCACTGGCCTCCTGGAGGCAAATACAGGTTTTCACGGGTCCACACATGTTGTTTCTGTAGCAAGAGGAGCTGGCAGCTCCAGCTCTGCAGTCAGTGAGATGCCCGTTTTGCAGCagcagggagagggagagctgaACAAGATGCTGGACCACTTCCTCCAGTCCTTTGAGCAGCACGTTGACAGCTGTACTGCCAGGGACGAGGTGGAGATGTGTGGTCAAAACTGCACAGAGGCTAGCCAGCCTCACACGGTCCATCGCAAATACAGAAAAACCAAGACCCCTCACACCCCTCATCTACAGAATACACACACGCTGCATCCACCCAGACACTCTCAAATAACTGAACTGCAACAGAGTGATGAAACTGAAACACTGCGGAGATGTTCACAGCCATGCAAGGCTTCTGCTTGCGGTGCCGCTCCCCCGAAACATACAGCATCACCGAGGAAAGTCAGAGCGCCAGCCAAACGACGGAAAAGGGCGAGGAAACCAGTGTCATCAAGTGACGCAAAGACCAAAAGCATTCATGACCGAGGAGACAAGCAGCTAAAGCAGATGCCTGTGGTGAAACTGGAGAGGAGTGTCCCGCTGCCAGCCCAAGTTAAACTGCACCAACCCAGCTGTCCGGAAGTCCAGAAACTGGCAAAAACAAAGACCGGTGCATCATCCCGGAAATACCCACGTGAAATGGTTCAGCCGTTCTCATGGAGCACAAAGATGTACCCAATCAGGAGTAGGTTTAGAGAAGCACATATCATGGACAGCCTACCCTTTCTTGAGGAGCCACCCTCAGCAGGCCTACCAAGACCAAGGCGAGGCAGGCCAAAGAAAAATGGACAAATTCTCAGTTTTTCTAGTGGTGGGAGTTCAGCACCACCTATTCAGCCACAGCCTGTGGAGCCCTGTTGCGTCGATGAACAACTAGAGAGAAACCAAGAGAGACATGAAGAAGAATTGAGTGTCCAGCCACAGGAAGAGGCAGAGGCACCTACAAGCAGGGGAGAGAAGAGGGGAGCAGAGTCCGAGAAGGAGACCAGTGACGTGGCCACTGTGGCCAAGAGGGTTTGCTTTGAGCGAATGGCCCAGCTGACCTCTGAAACATGCACACCAAGCTCTGAATCTCCAGACTTTGTCTCTGAACCAGCAACCAGAGAGCCACAGGACGTTTCCAGTGTAGGGCATCGCATACAAAGAGAACAACGGGAGGAAGAACCAGCGCGGAGAGAAATCCAACTCAGGGAAACTGGGGGAAGTTTGATGGGTGAAGAGATACAGAGCAGCGATGACGAGATCATCGACGTGGATGGACCGACTCTGTCGCCTTTTGTCAAAGTGAAGCCTTCTGTTTCACCCTCCTCACATTCAGCCAAAGAGCTGAGTCTGGGGTCGACGGGCAGCTGGGAAGAGGACGACGACGAGGACATTGATGTGATTGGCGGTGCCAGTCCCGCCCCTGATCCGGTGATTATCAGCTGGACAGAGTCttcagaagaggaaggagatgaGGATGTTGATGTTGTCGGTGAAAAGACAGACTACGCTTCATCGGCGGTGTTGTCCACTGTGAGTAAAGATGAAAGGTTTGGGAACCTCAGACCTTCAAGTGAAGAATTTCATTCAGATGTATGTATCACACATGCATTTTACTCACTGACATTATCATGTAGCCTGGAACATTtctattaaattacatttaactaACGTCCGTTTATGTGCATGCAGTTTCAAAGCCACACACTAATGTAGCCACGAATGCAATCAAGCCTGTCCAAGTATACTGGTTTATAATTTGAATCCCCACTGAAGTAATTTTGATAATTTGAAGTGGATTGGTGTGTTGACAGGAGAATGAAGAATATGAAACATGAAACTAAATTACTATGATTTAGGGTACATTATTTGCCCTCTAAAAGTTGATGCCAGGAACATCAGCTTGTATTTCATTAGTTCTGTTAGTAACTGGTCCTCAGTCTGTTCTCCTCCTCTGCGTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640437.1 lncRNA downstream 14789 21149902 ~ 21164063 (-) False LOC120566633
XR_005640436.1 lncRNA downstream 14789 21160341 ~ 21164063 (-) True LOC120566633
TU143341 lncRNA downstream 73878 21101252 ~ 21104974 (-) False LOC120566885
XR_005640392.1 lncRNA downstream 107288 21070626 ~ 21071564 (-) False LOC120566356
TU143417 lncRNA upstream 65252 21252905 ~ 21256647 (-) True G106784
TU143431 lncRNA upstream 98661 21286314 ~ 21287781 (-) True G106793
TU143444 lncRNA upstream 124710 21312363 ~ 21314127 (-) True G106802
TU143459 lncRNA upstream 172663 21360316 ~ 21408289 (-) True G106813
TU143475 lncRNA upstream 201959 21389612 ~ 21401183 (-) False G106825
XM_039813190.1 mRNA downstream 80 21176882 ~ 21178772 (-) True crybb1l1
XM_039813060.1 mRNA downstream 40414 21136616 ~ 21138438 (-) True LOC120566535
XM_039813186.1 mRNA downstream 47850 21128711 ~ 21131002 (-) True mif
XM_039813178.1 mRNA downstream 50292 21121202 ~ 21128560 (-) True LOC120566627
XM_039813177.1 mRNA downstream 51693 21121202 ~ 21127159 (-) False LOC120566627
XM_039813192.1 mRNA upstream 9112 21196765 ~ 21219431 (-) True LOC120566637
XM_039813193.1 mRNA upstream 9112 21196765 ~ 21219430 (-) False LOC120566637
XM_039813194.1 mRNA upstream 9112 21196765 ~ 21219430 (-) False LOC120566637
XM_039813198.1 mRNA upstream 9112 21196765 ~ 21219429 (-) False LOC120566637
XM_039813195.1 mRNA upstream 9112 21196765 ~ 21219429 (-) False LOC120566637
TU143328 other downstream 47882 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 944928 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1197719 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1696294 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 1959708 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 602600 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 932032 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1503507 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1803334 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1942056 23129709 ~ 23134785 (-) True G107284

Expression Profile