RNA id: XM_039812652.1


Basic Information

Item Value
RNA id XM_039812652.1
length 5762
RNA type mRNA
GC content 0.46
exon number 12
gene id zdhhc5b
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21289531 ~ 21350978 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGGACTAGTTCCGGGATTCCGAAGTCGGCCTAGCAAGCGAGCTAACTAGTTTGCTAGCCTCTAAACTCAAGGAGGACCGTAACGACCCACACCCTACAGGCAAGACAGCCGCGATGTTCGgggCATTCAACAGCTGACCCACAGAGCTAGTAGGTGAAAGAAGAAAGGGggacaaagagaaaaagactaaaatgcATCAGACTACATAACGCCACTGCTGCCCATGGCTTTGTTTAAGAGATGCAAAATGGGAAAGGAGGTCTATCTGCAGAGAATTTGGAGGTGGGAGAGGTCTCTATACACAGACCTGGCCAAGTGCGGTGACACCTTGATGACATGCACAGGGCTTCTTTTTGGAATGAGTTGATTTTGTCCCCATATTGACACAAAGACTGAAAGCAGGGATCTCACAAGAACCAGTGGACTCTGCATGGCTATTTGAGCGATTTTTCTTGTAAAGGCAAGGCTAGacagaattttttatttttttttttaacttttttttttttttatcagctttTTGAAAATTTCAGCAATTCCAACTGGACTTTTGTTTGATGTTAAGCAGAATGATGCAACTGGTTTAAAAGTGAATGTTTGTTTAGTTGTTTTCCCCTGCTGACTTAGTTTGAAACGCTGGAACTGTCCCTTCTGCCGCCATCCTCTGTTTCTTCCACCCACCCAGTGCCTAAATAAGCCTTCTCGGGACAATCGCAGGAGTCGTCAGCAGCTGCTGCGCTCAATCCTCTGCCTGTTCTCCTCTATGTGCTTCTGCTCGTAGCCTATTGGCTATCTACCCACTACCTCTTTAATTTTCTgctcttttgtttttatattcattTTCTCTGCGAGGCATAATCAAAACTTAAGCACAGTGATGAGCATTAATGTAAAAACTGAGTTTCAAGAGTGGAGATAAATCTAGATTGCTCCAGTTTTAGTTGTGTGTGCGGGTGTCAGTGCTTTTGTGTTTGAGCACAGAGAAGTCTTACGGTTGCACTGGTGCCAGGGAGCTGTAAGGTTagatttatttatattgttgCACCAAAAACGGTTACATTAAAGccatacaaaaatatttatgcATTACCTACACATATTTTTGTATCacattgctcttgtatagttttGCTTTAATAAGCCTTTATTAAGATTATACAcccaaattaaatatttacaaCAAGCTGTACACATGCAAGTAAAGCTGTATAATGCTATATAAAGCAATCCTTTGATTTTTGAGTGATTATATTAGTGCCAGGAGACTTTTAGTGTTCGAATCCCACATGTTTTCAGTTGCTGCTTTGCATAGTGTTTTCTTTTCCAGTCTGTAGTCATGGCCCCTCCTcccaaacaaacatttaaccTATAAAGCACCATTTACAGTAGGTAGACCGTAGATATctacctctctctgtctcttctctcctctctctgtctctgatgCCGGGCTTCAGTGGTGGGGTGGTTGGGGGAGGAGTAGGTGTCCCTGCTTCTGCTCCTCCCCGTCCATTTCGTCCCAGCCGGTATGTCCCAGTGTCTGCAGCCACCACTTTCCTTGTCGGATCCACCACTCTCTTCTTCTGCTTTACGTGCCCATGGTTGTCAGAGTATTTCTCCTCTGTCATTCCCATCTACACTGCTGTGATCTTTCTCTTCACCCTTGCTAACTTCTGTATGGCCACTTTCATGGACCCTGGAGTCTTCCCGAGAGCTGAGGAGGATGAGGACAAGGAAGATGATTTCCGTGCTCCACTCTATAAGACGGTGGAGATCAAAGGGATCCAGGTGCGCATGAAGTGGTGCTCGACCTGCCGCTTCTACCGCCCGCCGCGCTGCTCGCACTGCTCCGTCTGCGACAACTGTGtggagGATTTTGATCATCACTGCCCTTGGGTGAACAACTGCATTGGTCGGAGGAATTATCGCtatttcttcctcttcctgctaTCCCTTACCACCCACATCATTAACGTATTTGGTTTTGGCTTGGTTTATGTCCTGCACCACCGCCAGCAGCTGGACACGGCACATGCTGCTGTAACTATGGCCGTTATGTGTGTGGCTGGTCTGTTTTTTGTGCCAGTTGCTGGCCTGACTGGATTCCACATGGTGTTGGTGGCCCGCGGTAGGACCACAAATGAACAGGTGACGGGGAAGTTTCGGGGAGGTGTAAACCCTTTCACCAATGGCTGCATAAGAAATATTTCTCATGTGCTGTGCAGCTCCCAGGCCCCCAGATACATGGGCCGGTGGCGGAGCCCTCAGGCAGTGGATGTACAGCCACCATTTGTTAGACCGCCTCTCACTGAGGCCCAGCTAGAAGCCAAGGTCCTGGACAACGGCATCCAGAATGACAGACACAGCACCAGGTCCAAGAGCAGTCTAGATCAGATGGAGAGCCAGTCAGCTGATGCAGAGCCTCCACCTCCTCCAAAGCCAGAGCTTCGTTACCCTGGCCTGCCCCGCGCTGACAcggaggAGAGCAGCTTGTTGACTGAAGCTCCACATACGCCGTCAATGTACAAGTACCGACCAGCCTTCAACAGCCCAGGAAGGAACCACACTGCCCTCACACACCCCAACAAGATGATCCGTGGCGAGAGTCTTgactctccctctccctccatcctcctGTCCAGCCATCAGCCTAGCTACCGCTCGGAGCCGAGCAGCCTGGACGGAACCACAGTGGTAGGGGGAGGTGTAGGGGCGCgcagagggggaggggagaggggtgAGGGCCCCGGAGGCCCTGGCGGGACTGCTGGGTTGATGTCAGGGGGCATGTCAGGTTACTCCCTGACTGGGCGCTCCTACACCTCCTACCCATCCTCTCTAGTTCTGTCCACTGGTGGCTCCCACTCCTCCAGTCTGCGCTCAGCGCACCCGGCACATAACCCGCTGGCCACGCTCCAATCAGAGGGCACCACAGACACCAGCTACAAAAGCCTGGCCAATCAAACACCTCGGAATGGCAGCCTGTCCTATGACAGCCTTCTGACACCATCCGAGAGCCCAGAGTTTGAGTCAGCCGCTCATGAGCTGTCGCCGCAGAAGCCTCGTGCTCTGTTTCCCTCAGGTCAGCCTGAGGTGGTGTCACCCAGTAGCCCGCTGCAGGGCTACACGTCGCCCTTCCTCTCAGCTCAGATCGCCCAGCAGAGGGAGGGGCAGCTGCTCCAGGGCTCTGCCACTTTCTCCTCCCCCCACAGGGCCTACCTGCGTGCCGTCAGCccgccccctccctcctcctctgggCAACCTGAGATCCAGCACCTGCTCCAGCATAACCAGGACTCCTCTTACCGAGCCCCTCGTAACCTTTCCTCCTTGTCCTCTTCCCCTGGGGCTCGCTCACTAGAGCCCCCTGTCTCCCCGCCACCTCGCGGCCTCTCCCTCGGCAAGTCCCAGTCTTATATTGGGGAGGCAGGGTCTCAGCACAAGCCTCGGCCCGCAGGAGGAGGCGTTGTGCTGGGAGGGGGAGGAGCCGGAGGAGTGCATCAGGCTCCACAATCCACCTCTCGTCCAGTCTCGGCCAATCACACCACATCCAAACCAGGGGGTGGAGTGAAGAAGGTGACAGGCGTTGGAGGGACCACTTATGAGATTTCGGTTTGAGTGACAGACATCCTTCACAGGTCTATGACAAGGAGAGGGAAAAATTCACTGGACTACATCCACTTGTCTCTTTCCTGTGCTGGACCTGATTCATGATTGCAGCCTCCTGAAAATGACTGTTTTCTGCTGCAAAGGACTAAAGGAGCAGGCCTGTCTGGTACTCACTTTGTTATATTTGTAACGCCACTGGCCACTCTTCTCTGCTAGCCTTTTCAGATTTGAACAAAGAGTAAAAAGGAGACACTGGTTCAGTTTTCACATGATCAAGTCGTCTCCATTTAGCCACTTTGTGAGCCATAGACTGTTGTGACTATCATCACGGCTGGGTACAGACATGTCTATAGAACACGCATAACTATTCAATGATTTGCTGTTTTATTTGGTACATTAGCACACAGAGTATTGACCACCCTGTCCAACACTTAAGGTAAGGATGGCCTTTATCCCGTTGATTTGGAATTTTAAGAGGACAGATTTAGGACTGTTGACCAATAGAAATGTCTTCTCAACTGTCTGAACGGACCACACAACCTGATATCGATAAGAGTAATGAAGAGAAGTGTCCAATCTATAAACACAGTATAATTTTAGTTttataaaatctttttttaagtattgttttatataaatgtataaaatcttacagattattattattattattgggtcAATTAGTCAGGTATTGAAAATGACTATGGATGACGGTGGCAGATGTACTGTGTGTAATTATTCATGAAAGCGATTTCAAATCAGTTGCCTGTTTGTATTTAATGGCTGCATCAGCCACTCATGAGTTCGTGCTGGGATTTTCATCGTCCAAAGGGAATGATGGTCGTTGGACAGGTGGTGGACAGCTGAAGTTGCAAATAATTGAGCAAAATTTTCTGAAAGCCACAAAGAAATTCTGAATTACGATTGCAGCACAAGCATCTTTGTGGAATGTATGCTTGTAATGTTTATGCTAGAGACATTATGCAAAATCTGTTAGTAGCTTTAAGATCATTGTATGTCTTtttggtgtttattttttttcttcttttctgtgatgtttTGTCTGTCAGTCAAGATGCTAGCAGAACCTTAAACCTTTAAAAGATGGCCAGCCAAATAGGGGGAGCGAGGGAAGAGCTTATTTATTTCACCAGACAAGACAACCTTGTAGTTTTTGGGCACAACTTCAAACCAGTCTCTACcagtttatttcttttttttgagaaaagaagttgaattttttatgaaaaaaaaaataaaactttataaATGAAACTGTAATTGCAATATGCCACTGAATAGAATTTCAAGGAGGGACTGGTTTGCAATTCGAGacggtttgtttttttccttgagACCATTCATAGTGAAGTatgcacattattttttttttctatcggtttatattttttacatttttccgAGGAAATAAATGTAAGGcagattttgatttttttttttttttttattaacttttaaaATTTCCGTAAAGgtacatttaaattaattttttccTCAACTATGTTAGGAACGGAATAATTCGAGGGAGGGATGTGTGTATGGGAGTTTCAGGATTGGGCATTACAattaaagttttatttattattttttttctatcaagGCCTACAGTTGAGTGTTAGCAGTAGAATTTCAAAGCTCGCTGATTGTAGCACGTCTTTGGGGAAAAGTACACGCTTGAAGCACACAAGTATCATCGTTCAACCCAAAGGACCGTGTTACAAGTTTTCAACCCAAGTCTGTCTTCAGTGTGCATGTGACTTTTGTTTGTCGTGCTGAATGCTTCACTGGCGTGCATACTTGTGAGAATATTGTCAAAGCCCACATGGTTGATGTAACAAGAAAAGAAGCATCATTAATGGCACAGGTAGCCGTCATACAGAGATAAAAGAGAGCCTGTGTTACTTTTCTTCCTGCTCTGGCCAAGGATGGTAGCCACTGAACAATTTGAAACTATGTGGGTACAGTAAAAGTATACTTCTATGTGAGATAAAATATTGCTATTGTGAGCTGTGATGAATGGAAAGGTTTCACACAAATATCTGAGTACATTAAAGACATTTCTAAAATGGCCttataaagatttttttaaaagatgtcTTCTCAGAATAAAAAGGTCAAACTGATGAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143384 lncRNA upstream 6319 21279714 ~ 21283212 (+) False selenoh
TU143385 lncRNA upstream 6319 21279714 ~ 21283212 (+) False selenoh
TU143312 lncRNA upstream 84155 21204689 ~ 21205376 (+) True G106712
TU143306 lncRNA upstream 87361 21196804 ~ 21202170 (+) False G106709
TU143305 lncRNA upstream 90263 21196804 ~ 21199268 (+) True G106709
TU143509 lncRNA downstream 144835 21446882 ~ 21447096 (+) True G106851
TU143754 lncRNA downstream 458951 21760998 ~ 21761444 (+) True G106972
TU143757 lncRNA downstream 461320 21763367 ~ 21763641 (+) True G106975
TU143779 lncRNA downstream 541615 21843662 ~ 21843950 (+) True G106992
TU143814 lncRNA downstream 1028965 22331012 ~ 22378340 (+) True G107025
XM_039814349.1 mRNA upstream 1725 21284018 ~ 21287806 (+) True clp1
XM_039814347.1 mRNA upstream 6302 21279687 ~ 21283229 (+) True selenoh
XM_039812706.1 mRNA upstream 18400 21264992 ~ 21271131 (+) True rtn4rl2b
XM_039813937.1 mRNA upstream 30485 21245779 ~ 21259046 (+) False slc43a3b
XM_039812665.1 mRNA downstream 6045 21308092 ~ 21310959 (+) True si:dkey-6i22.5
XM_039812664.1 mRNA downstream 8990 21311037 ~ 21314140 (+) True med19a
XM_039813718.1 mRNA downstream 80680 21382727 ~ 21401180 (+) True ssrp1a
XM_039813720.1 mRNA downstream 80681 21382728 ~ 21401180 (+) False ssrp1a
XM_039813719.1 mRNA downstream 81131 21383178 ~ 21401180 (+) False ssrp1a
TU143018 other upstream 937364 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 1228193 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 1683758 19604840 ~ 19605773 (+) False G106237
TU142049 other upstream 3396001 17890967 ~ 17893530 (+) False gabra6a
TU141898 other upstream 3603832 17682919 ~ 17685699 (+) True G105677
XR_005640584.1 other downstream 146757 21448804 ~ 21461450 (+) False stx3a
TU143990 other downstream 1560143 22862190 ~ 22865676 (+) True G107163
TU143997 other downstream 1652925 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 1956224 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 1966744 23268791 ~ 23270216 (+) True G107333

Expression Profile