RNA id: TU143459


Basic Information

Item Value
RNA id TU143459
length 5929
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G106813
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21360316 ~ 21408289 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacgcacgcacgcacgcacacacagatgtgGACCATGTGCTGACAAACAAGTGCCCGCATGAACCTTAAAAGCAGCATTAGCTGAGCAGGAAGTGACTTAAATGGGAGGTCGACTGTGTCAACGCtgacacatcatcacacacactctcactaaGTGGGTGAAAGGGTTAACGCTGACAGAGAAGTGAcacatatgtatacacacacacatacacacatataagaCGTGTGTTTTTTACATTCAGTAAGCAAAGACTGAGGGGCCGCCATCAGTCAACAAAGGCAGCTTTGTTtggtctgtgtgagtgtgtgtgtgtgtgtttatctgtgtgtattgtttgcGTGGGCTTGCAAGCGCAGCACGTGTGTGAATCATCTCTATGTGTCAGAACTTTGTTGGAATGAGGCTTGTCATGCGTAGCTATCTAACAGCCATCACTcagctctctttctgtctgtctctctctgtcagcgAAGCAGAGACAAATTGCTGTAACTAATACGCAACAGGATCGCCGAGCCCCGTTTGTATGACTCAGCTGGCGAGTCCTTCTATAATAACTGATACTGTGAGTGACAAGGCATCGACATTATTGACTTGCTCGGTCTATCAGGCAGTTGCTAACAAAAGAAGGCTCTGCTGCTCAGACAGGCCTGTCTGTGTGCCTGGCAGGCCATGATATAAGTCTTACGACCTACAGTGGAGCCGATGTGCAGGCCACCTTGTTGAAGAGCTTTTATTTGCTCCTGGAGAGCACCTCTTCTGGTCTTTTTTTCTGACTCCTTCGCTCCACACATTACCTCCTTTTAATCTTGAAGAATCTCTGTGTTCCCTGTGGTCAAgtatacaaaatacaaatacatcaTGTTGAATGATAGTAGGCTACTGGCACCATctcaaaatgtaggctataaaaAAAAGCACTGAACTCTTATAACATTGTCTGACTTACGATGgacagtttaaaaagaaaatctaaatggatgcagggCGAGCAAAGATATCATCGTTTTTCTTACACACGTTCCTCTTAGTGAACAGTTAGGTTGGAGATTTGGGACATTACTTGAGGCAATTTATGAGACTTCACGCAGCTCCATCTGGGGCCACAAATGGCTTTATACACCTGTTTTTACCTAAACAGCAGTACTCCGCAAtacctgtaaacagactttcaTGTGTAAGATTGTTACAACTTAAGGACTAGCCTATTTATTCTTTCTAAAAGTTGTATTGTAATAGTAAAAGCCTGGATCGCTCACTATCGACACTGTAACTGGAAGTCAAAGTACTTTCAATGCTTGAATAGTCAACAGATGAGCaagtacattaaaaaaatattagatTCTTTGACAAAATATCAAAGGTAAGAGCCTTTGTGTATAAAAATGTAGGCATACCAAAGGTCAAGCATTTCTGCAATTCCTTTGTACGTACAGCTACCAATTAGCTAAAGCTAAAGATGATGCTTTGTAAACAGTTGAGGAATTGAACACCGACTGTGACATCTGCTGGACATCCTGCTAGCTAGTGTGCAGGCGTCGGGAAGGGGGCTCGCTGGCCTCTGTGCCTCCGTGCCTGTTTCCAGCAGGATCTCAGGAGCTGTGTTGTCCTTTCCGACGAGCCTGGATCGTGGAGTGCTGGTCCCATTCAACAGGTtgactctttttctgtgtgctGATCTGACGGCcacatttactgtatgttgaatcatgcacaagttgaaggaaTTGATGGAATTACATTTTACTGAAATTGTACCTCTGCGTTTACATGTGACAAGTATATCACAGTATTTATAGCCCTACTTCttgactgaactgaaaaaaagttaaaataattgAGTCTGACCCCAATGTAAAAGTATTCTATAATTATATGAGAGACTCacttgtttttatgttgtggAACATTGAATATATCAGTACAAGAAAACCTAAAGTAAGTTGCTAAAAGAAGTTTTGCTTGTACATTATGAGATTGGATGCAGAGGTAAAACACCTGTTTACACTTCACTCGTGTTGTAACAGAatcacagaacaaaatatttatgTTAGTTAGAAAGTTGCAAAATCTGAATATATCACAAGGGTTAGGAAATGCAGTGTTGTCTGGTTTAAATCAAATGCAGTAATATGCACCAGTACACGTTCTCCTCCAAAGCACCTAAAAATATAAATGGACTACTGAAGTATATCAGTCAACAGGCCATACAAATAAAGTGTTCCTTATATCCAGATAGCATTCAACATGATTCAATGTGATCTCATCATTGAAGCTGACCAATCTCCCAAAAACCTGTGTATGCCTTTAAGATACACAGATGCGCTGGTCGAGACGTTCTCagacctcctcttcctctctgtctgtctttctctctattTATCCTTCTTTTTGTTCACACTCTGTCTCCCAATCTTTTTTCCATATGTCCCTCTGCCTTCCTTCAATGTGTCCATCCGTATGCCATCCTCTCTCTAACTGCATGagtagtcattttgtgtcacTTTTGCTTCATTTTCACCCCATGGGTCCCCTTTTCTCTGCTACAATCAAACCCTTTCACGCTTTCCTCAAATTCCCTCGGCCACCCCCGCATTCACTTTTTCCATCTGTCTCCTTCCAACTGTCTCCTCGTCTCctcttccctctccctccctccctccctccctctctgttctGCTCACctgcagcacataaaaattcctcttttctttctccagaGGATTGTTCAGTCGCTTAGGGATTTACTGCATTCCTCTAtgctttctctccttctttctctccatATCTGTCTCCCCTTGTTTCTCTTCGTTTTGGCAGCACTACACAGCGTTTGATTCAGATCTTCTCCTTTGTCTTTTTAACACATTTGTATCCCTCTTTAAGCccctctgtgttttctttctccatccctccctgtCATTTTAATAATATATACTAATCCTATACCTGTCGTTTCCATGACCCCACCCTAATTTGTTTTTACTCCATAGCACCCACTATACCTGCCCCACCTGGCCTCTCCCTCCTGCTGGGTTTCTGCCATGAGCTGAAACATACCGCCTCCACTTACTTAGCTGGAGGGCGCAGGGTTGGGCTGCAGCTTCTCACCGCCGTTTTTTTGGGGTTGGTGGGGGTGGAGGTGAAGGGGCGCTCCAGGGCCTGGGGCCTGGGATGAGGTTGATTTATGAGTTAATCAATTGGTCGTCCGTGTGAGTGAGCAAAACCACAGAGGTGTGTGAGCGCTTTCATGTCACTGTCTGTGCTTGTTGACTTAGTCCCTTAGGAAAACACCAGGAGCTGTCATCCCCCATGTTGCTCAGCTCCCCgacatgttttcaaaagcaatTAGGGAGAAAATAGAGCTGGGTGTTCATTCATCTGATGGTTGAATGGCTTTTGTATGGGTGGATGTTCGTGTATGGTCGTGTGGGTGTCTTGCAGAAGTCTTACCCGACTATGAAAAGTAGTGACATCACACGTGCAAAAGGTAAACTTTGGCCTCAGAAAGAAACCCAAGCCTTGATTCATAATGTCAATTTATCAACTTCTTATGGCCGATGTGACAGCAGACAACTTTCCAACATGACTTCCACACCCAGCAGACTATCTTCCTCACCTGTTGAAACTTTGCCCAATATCCACATAAGTGTTAAAACTGATTTGGTCTGCGAGCTCATTCATGATAGATTATGAGAGATGATGTAAAAGACATTTGCAGATTACTGTCAGGGACAATTAGACTAAGTGCAGATTTCCATCTTTAATCACCTCAAACTTGAGTAACATGTTCAGATTTGTCACGCTTAAAGCCCGTTAAGAACTCAACGTTTGATAGAATTGTGATGGCTCAGTTTGCTCTGAGGCTTGGTCAGCAGGCTCAAATCTAAAATAACAACATATTACAAGACAAACCATGTTGACACCTCATGTCTGTGTAATCCTGAAAACCAGGTGTTGCTgcaatttttggggcatttttaggcctttattgacaggacagcagaagaaatgaaagggggaatgacatgcagcaaagggctgcaggtcggagttgaacctggGCCTGCTGTGTCAAGGAGTAATCTTCTATAGATGGGGacccgctccaccaactgagctatctgggcacaCCAATTTTATATATTTGCTGTGCTCgtgcttttctttctctttctctctctctgtctcattctCAGTGCCTGTCAATCTTGTCAACGTATACAATTAACGTATGTTTTTATGGTTATGTGGGGAGAAAGtgatgaaaagagaaaacaagcaAGTGCTACtataaaggagagagaaagagaaagccgAGCCAGATGACAGAAAGATGATAGAGCAGACGTTTGATGGCATCTAATAAGTCTGATAACTGACATGCATCCTGGCAAAAGCACAGACGCACAAATTCAAAACAGAGGGGGAAACGAAACAGGCAGGGTAAACACACTCATCCAAACACAGGGTATATCTCAGCACCTTTGTTCCTCAAGCCAAGCTATCCTGAGGTGTTCCAGCAGTTTTAGCCCGGAACTTCCCTCTGTGCATTTGTTTTGCTCATTTTATGACAATCATATTCCTCCCCATCCCTCGTAAAATTTCACTTATGATTAATGGCTGCAGTTGTGTGTGAGCAAAaaggtttttttcttctcttttcttttccccgAGGCCTTGGGTGGGAGTCAGTGAGGCGTTTTACATGTTGCTGTGTCGCGGTCTACATTACATGTTTGACGTGTTACGGTTTGTTAGAGACTAAAATGCCTGTTTTGGACCAGCTGTCCACCCACACCGGGAGGACTTACAGTGCTCTGTAtcactctttctcacacacgcacgcatgcatgcatgcacgcatgcacggacacacacacacacacacacacacacacacacacctcaatcCCACTCCGCGACCTGAAAATGGGAGAATGGTGCGAAAGGTAAATAGAAAGCTTTTAAACTGTCTGAGCGACGCACAAAGACAGAAGATTATGGAAGAACTACAGACTCCCTCACATAGTCGCACACTTGTTTTTGTCAATTATGAAGAGACTTTGACTTACATTCATTCCCTGGAGATCTACCAATAATCTTAACCTTATATGCCACAACCcttaaaaaaaaccttaaaaataagtcttgtgatattctatatttttctttattgtcaacaaatcacaTGAAAAGTCTAAATGTAACCGTCTAATAACCATTGTCTGTGTAGCCAAATCCTAATAAAGCTTATTCCTCAGTTTCATAGACCTCTATTGTCttaaaacatataaatgagCCATTGTTGCACTGGTTGACATCTTCCTTTATTATGATGACGTTTTGAGTATTTTGATTTGAGGACATACACCGTCCTGCATTTGAGTACTCATAAGAGCACCAAATAGTCCCCAGCAAATGCACTATTCTGTTTGAGAGAATTGTTcaccttgcacggcagctggattctcgctATATCATGAAATCACGTGAGAATCATGGGGTCACGAAAATCcttcttgtcaggcttcaagtagtctggatcaacggcagtacatttccaggatgatGGCACTTGGCAGGTATGTATTTGCTGTGGAcgaaattacgtttaaccatgtatccagctaatttagctcacgttactgtattgtgtgaacagttacaTTAACTTTGTTTAATATTGTACGTGGCGTTTTCTGTGGCGGGGTGCAtatgttccatcaaaacaaattccttccttaaaccattttgcagagccaccgtctctACGTCCGGAGCTTaacaccgcccaagacgattgtgattggtttaaagaaatgcaaacaacacatttttttcgcctttatgtatctgtggtgtagccagaccttagcCTACTCTGCACCACTGTGGAAATAGGTCGGGCAATGCGAGACTGTG

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism
ko04512 ECM-receptor interaction
ko04916 Melanogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143444 lncRNA downstream 46189 21312363 ~ 21314127 (-) True G106802
TU143431 lncRNA downstream 72535 21286314 ~ 21287781 (-) True G106793
TU143417 lncRNA downstream 103669 21252905 ~ 21256647 (-) True G106784
TU143360 lncRNA downstream 177616 21179985 ~ 21182700 (-) False LOC120566634
XR_005640437.1 lncRNA downstream 196253 21149902 ~ 21164063 (-) False LOC120566633
TU143506 lncRNA upstream 32535 21440824 ~ 21443089 (-) True G106848
TU143511 lncRNA upstream 35108 21443397 ~ 21446726 (-) True G106852
TU143512 lncRNA upstream 35108 21443397 ~ 21446726 (-) False G106852
TU143545 lncRNA upstream 81767 21490056 ~ 21490821 (-) True G106872
TU143666 lncRNA upstream 292660 21700949 ~ 21725692 (-) True G106959
XM_039812660.1 mRNA downstream 11382 21314294 ~ 21348934 (-) False slc43a1a
XM_039812661.1 mRNA downstream 12888 21314294 ~ 21347428 (-) True slc43a1a
XM_039812659.1 mRNA downstream 20293 21314294 ~ 21340023 (-) False slc43a1a
XM_039812663.1 mRNA downstream 52181 21302070 ~ 21308135 (-) True tmx2a
XM_039812670.1 mRNA downstream 121793 21233306 ~ 21238523 (-) True smtnl1
XM_039813290.1 mRNA upstream 8405 21416694 ~ 21423613 (-) False zgc:113229
XM_039813289.1 mRNA upstream 8405 21416694 ~ 21423613 (-) True zgc:113229
XM_039813291.1 mRNA upstream 8405 21416694 ~ 21423551 (-) False zgc:113229
XM_039813288.1 mRNA upstream 21205 21429494 ~ 21438163 (-) False tbc1d10c
XM_039813287.1 mRNA upstream 21205 21429494 ~ 21438163 (-) True tbc1d10c
TU143328 other downstream 229346 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 1126392 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1379183 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1877758 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 2141172 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 381964 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 711396 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1282871 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1582698 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1721420 23129709 ~ 23134785 (-) True G107284

Expression Profile