RNA id: TU143511


Basic Information

Item Value
RNA id TU143511
length 2911
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G106852
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21443397 ~ 21446726 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTATTGAGAATGTATTTATTCAAAGTTTCTCCCCTTAGTGCTTCCAGTGCACCGTACAACAGCATTATGTGAGCTGGAGTGCAGTGGAGGGTGCTCGATGATGAAGAGTAGCACGTTGCCATGCCAATGACAACACTAGGGTGGGTGTGTCCGATACAGTGAAATTAGAACCACAACTTTTTCACCAAGTTTTTACCtagttttaaaacaaacaaaaattcaaaaataaaaaatctgaaaGGGATTTTACAGTAAACGGGGGGCAAAAATCCAACAACTTCCTGTCCACATTTGGGGGTACGAGAGGGTAAATTCAGGTAACAGGTTAGAGGTCATCTTCTTCATCTGGGAGTGCTGTTTGCGATGCAACCTGGACAGTAAAAGACAAGATACATTTTCAGATTCCCAATGTAAATTGTTTTTGTATACTTTGCTCGGGCAAGGAAGCGGCTGAATTAAAATATACTACACAGTCAACAAAACAGACATTGCACCTGTAGGTTATACTCACTTGAAGCTCTTCCTCGTACTTCGCAGCAAGGTTCGGGTCCATTTGAACCTCTGGGGGAGCGAGAGCAGGCATTGCCACAAACTCCAGGTTGGGATCGCCGATTAACTTCCTTGCTAGCCACAGAAAAGGCTTCTCAAAGTTGTAGTTACTCTTGGCAGAAATGTCATAGTACTGGTTCTTCTTGCGGTGAAACACAATGCTCTTGGCTTTGACTTTCCTGTCTTTGATGTCCACCTTGTTGCCGCACAGGACAATTGGAATGTTCTCACAGACACGGACCAGGTCACGATGCCAGTTTGGCACGTTCTTATAGGTGACTCGAGAGGTGACGTCAAACATGATGATAGCACATTGCTTGAATGTAGTAGCCATCTCTCAGGCCTCCAAACTTCTCCTGACCAGCAGTGTCCCACACATTGTACTTGATAGGTCCTCTGTTAGTGTGGAACATCAGTGGGTGGACCTCTACTCCCAGAGTAGCTAGAATTACAAGCAAAGACAAGATGTATGAGAGcaagaaaagcagaaaacagGTTGAAAACTCCAAAAATGTGTTACTTCATATAGATTAAGGATCAAACTTTAAAGCTGTGATTATAGCCTGAACGATAGATATTTAGGAATTTAAAATCTACCATATATAACTATAATAAccgtgtaaacaaacaatgctTATCCGTTTTTCCTTCTTATTGTGACCAAGAAACATTCTAagcaagacactttacagttgAAAAGCCAACATTTAGTGCCCTCTAGTGGACAAACTATGTGATGTGATTTCTAAATTACATCAAACCTAGTTTGGCTTTTATGTACTGCAATTTCTTGTTATATATTTTGGGCAGACATGTACACCACTACCAGTATATCAGAATGGGAGGGCCTCAATATGGGCCCACAGCTCAAGTTTTGACCCAGGGCCCTGGAGCCAGCTGGTCCTGCTAATTGATGCACAATTGTTTACTGCAAAAGGCAACCATCGGAGTCGAGATTCCAAGTTAGTTCAACGACTTGAACTCTATCTGTAATATACTGATTTGTCATTCACTTTATAACAAGGATACTCACCAACATATTTCTTCTCAAACTCTCCTGTAATGTGCCTCTTCACAAAAGTCGTTTTCCCGGTGCCTCCATCTCCTACCAAGACAAGCTGAACACCGCCACCGGTACACACTGTGCCATTGAGTCCGCCGTGGTTGCGATTTATCTAAACAAAACAAGGCGGGATGGTTAGCATGTCCTCCGTCAGCCTCCTGTCCGCTAACAGCCTTAGCTAGATAGCAATCAGTAACGTTAAGCCAGCGGTGTTGGCGATTACCCGTTTTGAAGTCAGGTTTGGGGGAAACCGACGCAGTTACAGATTTGTTAAAAGTAAGTTGTTGACGCagtttagctagctacattacCGCCAACAGTAAACGTATTCCACCGCCTGTTACCTAGCGATACCCGATTCTAGGGTGTTCTATCCAAGCTAACGTCCCGACACGTTACCACGCAACGTTGCCGTTATGTTACGTCTGAATGCGTTCAAACTACACTGTATGTCAGACAAATACATGTAACACAGTACACTATTTTTGGATGAAAACACGACAACCTCGCTTCTGGACCAGTATTTCGACGCACGCGGTTGCGTAACGTTAGTTTGAGTGCGCCATACGACCGCACTTTTTCTTGTTCGACTGGAACAATCGAACTGCAGGACATTCTAACATGTTCCATGTTGCGGTTCATGGCCAACTTAAAACAAGTTCGCACATCAAGCTGAACTGACGTATTCAAGATTGGTAAAGTCATTAATAGCTAATACATTAGAGTAATATATGCGAGTCTCAAGAACAAAGCAGTGGAATGAGGGAGAGCTGTGCTTGCTAACCTGTTAGCTAGCACAGCATGGAAGCCATTCTCTTCACCGAGCTAACGGCTACGTTAGCATAAGAAAATCAACGGCCTATAGTAGTTGCTCGAGCCTCACAGGGTTACACTTGCAACGCCACATTAAGCCAAATCATACATTTAAGTTTCCCGTTGTTTTAACTGACTTTCCCGATAAACACAAACTTAAAATATCGGATGGCCCGCAATGAGAGAAGAATATAGAGACTCACCGGTGTCACTGccaagagagaaaagaggtaaATGGCTGCGTTCGCGGGAGATTCAGCGTGGACTATGAGTCAGTTTCCGCCCATATCATGTGATCACCGCAGCGGTAAAACGCATTTGATTTTAGTGCAAGTACTGCTATTCACAGACCATGATTCAGCATATCTGAGTCTTAAAAAGACACTTAGGCCTATATCTAGAAAATGTACTAAAATATAGCCCCATTAAAGTAACGTTATCGTTTTATACATATCTCAATGACAAACTTAAAGCAAATGCTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143506 lncRNA downstream 308 21440824 ~ 21443089 (-) True G106848
TU143459 lncRNA downstream 35108 21360316 ~ 21408289 (-) True G106813
TU143475 lncRNA downstream 42214 21389612 ~ 21401183 (-) False G106825
TU143476 lncRNA downstream 42214 21394462 ~ 21401183 (-) True G106825
TU143444 lncRNA downstream 129270 21312363 ~ 21314127 (-) True G106802
TU143545 lncRNA upstream 43330 21490056 ~ 21490821 (-) True G106872
TU143666 lncRNA upstream 254223 21700949 ~ 21725692 (-) True G106959
TU143776 lncRNA upstream 345079 21791805 ~ 21792629 (-) True G106989
TU143777 lncRNA upstream 349085 21795811 ~ 21796361 (-) True G106990
TU143778 lncRNA upstream 351497 21798223 ~ 21800003 (-) True G106991
XM_039813288.1 mRNA downstream 5234 21429494 ~ 21438163 (-) False tbc1d10c
XM_039813287.1 mRNA downstream 5234 21429494 ~ 21438163 (-) True tbc1d10c
XM_039813290.1 mRNA downstream 19784 21416694 ~ 21423613 (-) False zgc:113229
XM_039812765.1 mRNA upstream 48168 21494894 ~ 21500640 (-) True LOC120566376
XM_039812766.1 mRNA upstream 48168 21494894 ~ 21500392 (-) False LOC120566376
XM_039813062.1 mRNA upstream 60343 21507069 ~ 21510003 (-) True LOC120566537
XM_039813286.1 mRNA upstream 173137 21619863 ~ 21621608 (-) True LOC120566697
XM_039814152.1 mRNA upstream 245961 21692687 ~ 21697083 (-) False si:ch211-175m2.5
TU143328 other downstream 312427 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 1209473 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 1462264 19972415 ~ 19981133 (-) False fgf18a
TU142773 other downstream 1960839 19480018 ~ 19482558 (-) False tlr1
TU142573 other downstream 2224253 19215989 ~ 19219144 (-) False LOC120566717
TU143775 other upstream 343527 21790253 ~ 21790725 (-) True G106988
TU143804 other upstream 672959 22119685 ~ 22120067 (-) True G107015
TU143931 other upstream 1244434 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 1544261 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 1682983 23129709 ~ 23134785 (-) True G107284

Expression Profile