RNA id: TU143869


Basic Information

Item Value
RNA id TU143869
length 4452
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G107072
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22601140 ~ 22605668 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATGATATACATTCCTCTCTGGCTAAAATTATCTCTCATATCTACGGAAACAGAAAGCCTTGCATGAATGCAACGCAGCTCTTTTGTGCTGTTTATCAAGGTACAAATGCCAAAATGAGAGGAGCATTTCTCATGAGttgtaaaaaataatttcccaagttacacaaacagaaaagcaAAAAAGGAGAGTCTATTGCATTGTCTCTAGGGTATTACACTGCACTACAAGGAGTGGGTAGCTATTGAAAATCATTCACTGTATATATTCTACTGTATTGACTTGtgacacaaagaaagaaagagcacTGCAAACTGTTTGATATGCATGGCAATATCTACGTGTTCATGGTTcctttttttgcaaaaaaaagagGATATGCTTGACTCAAGATAAGAAACCGCATCATAAAGATAAGGAAAGAATTATGAACCTGTAGCAAGGTCACGTAATCATGCAGTGACCCAGCCAAGCACGCTTGCACAGATGAGTTGAGCTTGTCAGTCTGGATCACAAATCAACACATGGCCGTTTCGAGCCTGTGACCGACATTATTCAACAAGATGGGTGGATATCTGGAAGTCAGGAAACATTCATTAATCTCCCTGACAGAAAAAACATAACCCTCCCCCCTTATACTGGAGCGCCTCCTGCGTTGTCTTTGACCAGTGGATTATCTCTGTTGCCTGTAGCGCTCATGCAATCAATACCTCCATCACACAATCATGACTGACGCATCACCACACAGTTGCACTAAGTAAACACTGCAGGTTGAAAGGTGCACTGGGAGGTCATCACATGTCATATTTTCACTACCTTTCCATAGCTGAGAGTTTATCACTGAAACTTTGCTTTAATTCATGATTAAGTAACCAAGTTACTAGCAAATGATTGAAATCAGTTTGCCTGTATTTTTTATGTCAAGGAAATCATATCTTGTCAATACAAATGTTACATGACATTCAACATTATAAGTACATACCTGGTGATGTGTTAAGAGATTGAAAATGGCCATGAGGTGACAAATCTAACAAGACGGTATGTAAAACATCAGCTTTTTTATCACAATCCCTCCCTACTGCTTCCTGCTACACACTCTCTTAAATCTGCATAAACTATGATACACATTTGATTGTCTGAATCAGAGCCGCTACCTGAATATCAAACCAGAGAGAAACTGTCACTGTCACCCACACCAGGCCTTCAAATCCAAATAAAAAGCAAATAATGGATCCGGCTACAGCTGCTATGTGAATAGTGATGGGTGACAAACAGAGGTCAGGTCTGTTGTAAGCGAAGGTGAGTCAGTATTTGATGAAAAACAAGATTTAGTGAACTTGAAAAAGCTACTTAAAATACCCAGTAAACTGGTGTGGGATCCTACAATGTTTCATGCATTTATCATGACAAGGCCAACTTAAACGAAACATGACgtgtgttggtttgtgtgtatatgtgcctgtgtgtgtgtgtgtgtgtgttaacaaatcacagagaaaaacacaatCATGCCATGACATTGCGACAGACAGCAAGTTAAAGTGTTAAGCCCCTCCTTCTCTGAATAGTCGACAACAgagcaaagtttttttttttaaacttctatTAGTTTATCATAATTTCATCATGATAAAAATCGCATAAACATCATCATAATCGTATCCCTTTTCTAAACAAGATAAAGTTACTAGGTGCTGTTGAAAAGAGCCATGGGGAGGGAAAGTCACTTGTGTTCAAAGCACAGTGCAAAAACCTTTTAACTTTACAGCAGGGGCTTCTGTTTCATTACACTAGATTAGGTGTtagcacattttttttaaactacagtgtTTTATTGCAATACTTTATTATGGTTAATATCCTGTAACCATTATTAATTTTAGACTATAAATCAATTTTGAAAtatgcaacacattctcacacccaactcgtaaaataaggacgttcggtcaggagcctttctcgttcttattgacgttaaaagtctcctttagcgtctcatgtaaacgtgcttggtcgccactattgccgtcccttttgacgtgcttggtcgggatggttgggtttaggaaagggtcgtgggtgggcgtatggttctgtgacacgcgggaggaaagaaaaaagcgacTCTATAAAGCGACTCCAGCAAGgtggggaggacgcctcacacgccgggagacggccgcgggtgaagcgcgacaatgacggaatcgcggaggttgggtttaggagaaaaacaacggggaaaggacgcctcaaaagccgggaaacacacgccggagacgggggaaacaaaacgccacacgcgggacgcgaacccgggaaggacgcctcaaaagccgagAAACACACggcggagacggggaaacaaaacgccacacgcgggacgcgaacccgagtctcctgagtgaaagtccggtgtttcaCCCATCCACCACAACCAACCTCCTCATGCAACAATTTctccttacataccactcgctaaatctcatccaactgcggctctccccagtacgttacacaaatacgccgaagggtgcctttttcgtcgcatcagacgctgaaggccactgaccaaacgtacttattttacgagtttggaatgagaacgggttgaaatATAAGTAGGAAAATAAGGTGATGTATATTTTTCAGAGGAGGCTTTCACAGCCAGCAGTAGTGCTAGTTGTCACTTTGCCTCCCCATTACATCCCTGCCTCTCAGCTCCATCTACTTTAATACTCATAGAGGGGAAATAGTGTTAATCAAAAAGTGCATCATGAATATGTTGAGattaataataaaagtaaaCGATCTTTTTTGTCATAAATAACACTTTTTTCCTATAATATTCAATAAACCTCTTATTATACAAGTCGAGTAGTCACATGAACATCTTGTTCATATCTGGGAGCAAAGTTAACACTTCCTGATACTCGGAAGCTACAACCAGCCAACACAAACAGGACCGCTGTGTCAAAACTAGCAGGAAGATCAAGGAAAAGACTTTAGCAACGACCACTTACAGCTACTGAGGCTACAACACATGAACAGTGATGTGAAGCAATACAAAATGTCCACAGCTAGCATGTATTTGCGTTAGCAAGATGGTAGCATGTAGTTCACACATTAAAGTGGATTCAAAGAAGGCACATCCTCATTTAAAGGAAGATATGTTTTGGGACACATGCTTATTCCCTTTCTTGTCAAGAGTTAGATTAGAAGAATATTTGCACGCTAATAAAGCTAGCAGTTAGCTTAGTTTATAAGAAAGGCGGGAAACACAGGGAAACTGCTAGTCTGGCTCAGTCCAAAGGTAAAAAACCATTGTACACAtaatatctcatttgtttactGAGAAATGTAAAATCGACACTAGTTTTACAGGAAGTTATGTGCTGGAACTAGACTGGAGGCCgcccagtctttatgctatgcTAAACTAACCTGGCTGCTGGCTCTAGCTTCATGTAcaaatatgagagtggtattgatcttctcatatAACTCTTGCCAAGAAAACAGATAACTGACATATCAGTTAAAATGTCTGCAGTCTTCATTGGATTTTTGGATctgcattgttttgttttttaatctacCACAGCTGAGAAGTAATCTCACTGTTCAAATGTTGTAACTTCAAACTCTAAATGGAAGATGAGAATATTCCTTCCTTGGTCTTCAGCCTAGGGTCAATTCAGGAGGAAGATAAATCAAAAAGGAAGACCTTAAATGGTCATTAAAACCAGATGCCCAGCCCTGCCCTGAGTGACGCTAGGACATCAGATGATTTTAGGTCTACTGATGTTTGTGGTCAAGAGACCTTGTTCCCACTGATGGATTAGCAAAGCATTGGATCGCTACAAACTAACAGGACTGACATTTTTCCAGACTGGTGTGCATATCTTCAACACTTTCTAAATCCATAAGAAAGTAACTGGTCCTCGCTAAATGCAGAGAATAGAACTCAGTCGCACTGTCAACGTCTTTCAGCTCCCAATCAACCAGTCACCGGGCCCTTGGTGGGCCTTTTCTCAGTGGCAGGTCTTCATCCCGGTCAAGTATGGAGACTCTTGTCGGCACAGGCCcatctgctgctgttgctgctctTGAAGATCTGaggccaaaccatcaacaaAGTCGGGGACGGGTAGCCCTGAGAGTATCATGACTGACTTGTTCCAGATCATGAAAGTGGGTACAACGGGCAGGAGGAAGGAGATTTCAAAGGTGTGAATGTGCTGGGAGTTCATGGCATCATAGAAGGACAGTGAATTGTTGTCGTAGTCCAGCAGGACACCCAGCCGCCTCAGCTGCAGGCTTGCCTCCACCAGCATCTCCTTGCCGTCATGGCGCACCATAAAGTTGTTGTTGCAGCGCGAGAACACCCATGAGGATGAGTTCTTGCCACTCCATTCATTTTTCGGGGCTGATTTGTAAGCAACGCCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143866 lncRNA downstream 6259 22592660 ~ 22594881 (-) True G107070
XR_005640456.1 lncRNA downstream 8894 22590860 ~ 22592246 (-) True LOC120566739
TU143848 lncRNA downstream 122682 22453589 ~ 22478458 (-) True LOC120566740
XR_005640457.1 lncRNA downstream 122688 22453871 ~ 22478452 (-) False LOC120566740
TU143811 lncRNA downstream 288102 22312806 ~ 22313038 (-) True G107022
TU143905 lncRNA upstream 78065 22683733 ~ 22685458 (-) True G107097
TU143915 lncRNA upstream 107369 22713037 ~ 22718770 (-) True G107102
TU143987 lncRNA upstream 250457 22856125 ~ 22856346 (-) True G107160
TU144057 lncRNA upstream 269828 22875496 ~ 22876459 (-) True G107215
TU144063 lncRNA upstream 323186 22928854 ~ 22973760 (-) True G107220
XM_039812944.1 mRNA downstream 192929 22375266 ~ 22408211 (-) True tsc22d3
XM_039812942.1 mRNA downstream 218600 22375266 ~ 22382540 (-) False tsc22d3
XM_039812945.1 mRNA downstream 222774 22375266 ~ 22378366 (-) False tsc22d3
XM_039813572.1 mRNA downstream 585387 21884772 ~ 22015753 (-) False pcdh11
XM_039813571.1 mRNA downstream 585387 21884772 ~ 22015753 (-) True pcdh11
XM_039814009.1 mRNA upstream 113226 22718894 ~ 22743071 (-) True slc16a2
XM_039814021.1 mRNA upstream 172737 22778405 ~ 22783217 (-) False LOC120567161
XM_039814020.1 mRNA upstream 172737 22778405 ~ 22783217 (-) True LOC120567161
XM_039814022.1 mRNA upstream 173238 22778906 ~ 22783217 (-) False LOC120567161
XM_039813978.1 mRNA upstream 224742 22830410 ~ 22840569 (-) False dpf2l
TU143804 other downstream 481073 22119685 ~ 22120067 (-) True G107015
TU143775 other downstream 810415 21790253 ~ 21790725 (-) True G106988
TU143328 other downstream 1470170 21127838 ~ 21130970 (-) True G106728
TU142968 other downstream 2367216 20230908 ~ 20233924 (-) True G106443
TU142874 other downstream 2620007 19972415 ~ 19981133 (-) False fgf18a
TU143931 other upstream 85492 22691160 ~ 22692831 (-) True G107117
TU144086 other upstream 385319 22990987 ~ 22993229 (-) True G107235
TU144154 other upstream 524041 23129709 ~ 23134785 (-) True G107284
unassigned_transcript_471 other upstream 555191 23160859 ~ 23160930 (-) True trnaw-cca_10
unassigned_transcript_472 other upstream 555720 23161388 ~ 23161459 (-) True trnaw-cca_11

Expression Profile