RNA id: TU143999


Basic Information

Item Value
RNA id TU143999
length 1555
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id G107170
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22884077 ~ 22887891 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCACGAGTCAGATGGTACAGTATTCCTTTTTATTTACCtggcaaaataataaaaagggaaGCATTTGGAAAGTCCAAGTTAACAGTcaggaaatacaaaaatatagatgacacaattataatagctgtttttatttatttcctctctctctctccaaatggaaaaagaaaactATATTTCTTTGGATCAACATATAATAATATGGACTGTATACTTAGAAGACATCTTTTACACAGGATGCACAAATCCATGTTCAGCCCCATCATGCGACTTCCAACTACCCATCAGTTCATGATCCGGTAATGTCCTTTCATCCATTTGCAAATCAACCTCACTCATTTATTTCTAACAGATACCTAAATATTATTCCCTAATGCACAAAGATGGACATTTGTCTGAAGAGTCCTAAACATGATGCAAAAGCATTGACATGGCTAgCCTCCAGGGCTGTCCCACGTTTGGACGGTGGCACCAGGTGTTCAGGCAGCGCGGGCGGCAACTCGTGACCCTCCAGCTTCACTTTGATCAGGTGGTTGGCCAGGGCGAACTCCTCATCATCGAGGAGGCCATCTTTATCCACGTCTGCTAGCTTCCAGATTTTTCCCAGGACCGTGTTGGGCAGCTTGGACTTCAGCATCTCCTTCTTGGCTGCAGCGCCGGACACTTTGCCGTTGATGGGTGAGAGGGTGTAGAAGATCTCATCATATGTAGGCTTGTCACGACCCACCACCCACTCCAGCTCATCGATGCCTTCGCTGGCACCCTCTCCATAGCCATGACCAAAGGGACCATTCATGGTTCCCTCAAAGGCTCCACCCTTGACGGACTGGCTGGGCATGGCGGCTTCTTCCTGGCGCACCATCGCCATGAGACGTGCAATGTCGTTGGCGAGCATGTCCTCCACCGCCTCCAGCAGCTTTGGCTTCAGCGCTGCGAACTTAGAGAAGTCCTGGCCATTCAGCAGCTCCTGCATCTTGGCGAGGTTGGGGAAGTCTCCAGGTGAGATCTGGTGCTCCTTCTCGATCTTATGGTAGATTTCTCCCAGGTTGGCTATCAGCTCCTTCTTCTTGGATTCCTTTCCAAACACACTTGGCATGTCCTTTTTCAGAGAGCTGATAATGTAGGCCTGTACCTTGGCAAGGCGTGCTCGTTTGATGAGGTCATTGAGTTTGCGTAGAGCGGCGTTACGTGGCAACGACTGGATATCTAAGAACAGGTCCTGCTCCTCTGCCTCAAACAGCTTCCTGTTGTCTGGGACCAACAGGGGCTGGGCCCAGAACGACCCAATGTACACACGCACAACCTGGAATCAAGTTAGTTTAATGAGTTAACCTCCAATAACCTCAACTGATCATCAGGTTACACTTTACTACCCACACAAGAGGAAAATATTTCACAAGTCACATACATGACACCGCAATCTGGCTAGAAAGtttaaaacagacacaaaaataaatttgcATACTCAAAATAGACATACAGGATATGAAATAATGCAATACAGGACTGTGAGGTTGACAGTGAAGCAACAATAAAAGTTTTAAGCGTATGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640493.1 lncRNA upstream 8979 22867472 ~ 22875098 (+) True LOC120566955
TU143993 lncRNA upstream 9241 22867079 ~ 22874836 (+) False LOC120566955
TU143992 lncRNA upstream 9241 22874327 ~ 22874836 (+) False LOC120566955
TU143991 lncRNA upstream 17876 22865968 ~ 22866201 (+) True G107164
TU143988 lncRNA upstream 27209 22856655 ~ 22856868 (+) True G107161
TU144007 lncRNA downstream 21185 22909076 ~ 22909515 (+) False ubxn1
TU144013 lncRNA downstream 27403 22915294 ~ 22916077 (+) True G107182
TU144016 lncRNA downstream 31962 22919853 ~ 22923990 (+) True G107185
TU144017 lncRNA downstream 31962 22919853 ~ 22956899 (+) False G107185
TU144020 lncRNA downstream 37918 22925809 ~ 22926736 (+) True G107187
XM_039813836.1 mRNA upstream 4606 22877797 ~ 22879471 (+) True map1lc3cl
XM_039813683.1 mRNA upstream 21998 22858625 ~ 22862079 (+) True ttc9c
XM_039813685.1 mRNA upstream 21998 22858828 ~ 22862079 (+) False ttc9c
XM_039813678.1 mRNA upstream 28376 22847118 ~ 22855701 (+) True LOC120566951
XM_039813606.1 mRNA downstream 15864 22903755 ~ 22909562 (+) True ubxn1
XM_039813612.1 mRNA downstream 54571 22942462 ~ 22949531 (+) True LOC120566913
XM_039813065.1 mRNA downstream 91428 22979319 ~ 22987555 (+) True LOC120566541
XM_039814411.1 mRNA downstream 103073 22990964 ~ 22996988 (+) True rom1b
XM_039813822.1 mRNA downstream 110635 22998526 ~ 23039438 (+) False ccdc88b
TU143990 other upstream 18401 22862190 ~ 22865676 (+) True G107163
XR_005640584.1 other upstream 1422627 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2531910 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2822739 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 3278304 19604840 ~ 19605773 (+) False G106237
TU143997 other downstream 67081 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 370380 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 380900 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 566676 23454567 ~ 23466184 (+) False ubl3b
TU144289 other downstream 600410 23488301 ~ 23491358 (+) False LOC120566905

Expression Profile