RNA id: TU144013


Basic Information

Item Value
RNA id TU144013
length 412
lncRNA type inter_gene
GC content 0.58
exon number 3
gene id G107182
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22915294 ~ 22916077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCTGGTACACTTTGTCCCTGTGAAGCAGCACTTGTTCCCTAATCTTCTGCATCAATTCCTCCGTGTCTGTGCCCTCAGGTGTGGCAGGCTCTTCCTCCCCTGGcggcctctcctcctcctcctcctgggcCTGTTCGGCACGCTCCGCCTTCTGACTCTGACGGCACAACGTCCTCAGCTCCTCGTACTCCTCCGGGGAAAGCACCTCCTTGGGCTCGTGGCTGTTCAGGTGGTCCTTGAACTTCTCGTAGTGGGTGTTGTAGAGCTGGGTGGGGACTTTAAGGACTCTGTCCAGGACGGCTGATGCGTTCTTCATGTTGCCTTGCTCCTTCTCCCACTCGACATAAAGATCCCAAAGCCGGTCTGAGTGGAAGTCCAGACCTGCTGCTACAACCGCATCCTCGAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144007 lncRNA upstream 5779 22909076 ~ 22909515 (+) False ubxn1
TU143999 lncRNA upstream 27403 22884077 ~ 22887891 (+) True G107170
XR_005640493.1 lncRNA upstream 40196 22867472 ~ 22875098 (+) True LOC120566955
TU143993 lncRNA upstream 40458 22867079 ~ 22874836 (+) False LOC120566955
TU143992 lncRNA upstream 40458 22874327 ~ 22874836 (+) False LOC120566955
TU144016 lncRNA downstream 3776 22919853 ~ 22923990 (+) True G107185
TU144017 lncRNA downstream 3776 22919853 ~ 22956899 (+) False G107185
TU144020 lncRNA downstream 9732 22925809 ~ 22926736 (+) True G107187
TU144024 lncRNA downstream 13192 22929269 ~ 22932162 (+) True G107191
TU144034 lncRNA downstream 34518 22950595 ~ 22997038 (+) False rom1b
XM_039813606.1 mRNA upstream 5732 22903755 ~ 22909562 (+) True ubxn1
XM_039813836.1 mRNA upstream 35823 22877797 ~ 22879471 (+) True map1lc3cl
XM_039813683.1 mRNA upstream 53215 22858625 ~ 22862079 (+) True ttc9c
XM_039813685.1 mRNA upstream 53215 22858828 ~ 22862079 (+) False ttc9c
XM_039813680.1 mRNA upstream 59593 22847118 ~ 22855701 (+) False LOC120566951
XM_039813612.1 mRNA downstream 26385 22942462 ~ 22949531 (+) True LOC120566913
XM_039813065.1 mRNA downstream 63242 22979319 ~ 22987555 (+) True LOC120566541
XM_039814411.1 mRNA downstream 74887 22990964 ~ 22996988 (+) True rom1b
XM_039813822.1 mRNA downstream 82449 22998526 ~ 23039438 (+) False ccdc88b
XM_039813823.1 mRNA downstream 82452 22998529 ~ 23039438 (+) True ccdc88b
TU143990 other upstream 49618 22862190 ~ 22865676 (+) True G107163
XR_005640584.1 other upstream 1453844 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2563127 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2853956 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 3309521 19604840 ~ 19605773 (+) False G106237
TU143997 other downstream 38895 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 342194 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 352714 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 538490 23454567 ~ 23466184 (+) False ubl3b
TU144289 other downstream 572224 23488301 ~ 23491358 (+) False LOC120566905

Expression Profile