RNA id: TU144016


Basic Information

Item Value
RNA id TU144016
length 2246
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G107185
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22919853 ~ 22956899 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTCAACTTTATTTTCACTTGGTCTTTATCTTTTAGTACATTTGACAACTTTAATTGACAGTCTGTTCCTTCACTTCCATTTCCACCAATTCAAGccaacaaaattgcagcaacatgTACATTAATGATcataaaaacaatcaaaaagGAGAGACAAACTCATAGAACAACAAAACTCCTAAATGGTCCAATCATTTGACTAGACGGGACACAATCTAGAGTCTCCAGAGAATCAAATGAACATTTGCTAGTAAAACCTTTCAAGGATTAGATTTGACCAGTTCAATAAGATCCAAATGACACACTGGAAACCCTGGACAGTCCTGACACCTAGTAACACATGAAAATCTAAACTTTAAAGTTCTCGCTCTTCTTGAAGTGCATTAAAAATTATTTCGTAAACAGTGCTGGGAAAAGAActcaataaaacaaagaaagcacaTCAACAGGATGATCCGCAAACATCAGTGGTTCAGCCCCCTGAGGCGCTACCCACTGCCGAGTTTGTTCAGAAGAACAGCTGGaaatctctctctgcagcagttGAACGACCCCATTACTTTCGTAATGAAGCAACAATAATGTATCATTTTCCATGCACACAATAATTCATCACTGACGAGCTCAGGGAGAGACTGAACAATTATTAACAGGTCAGGATTgctaaaaaaattttttctccattttgagGTAAAAATAAAAGGTGGAGTCAGCTATTCTAATCCAATACACTTATTTCCTCACGGTCGGCTAGCTATCCGTTCTGTGTTCATCCACAGCCCTGGCTCTGTAAACGGGAAACAAGCAAACACTACTCCATCCGTGCTCGTGCACAGGCCCGGGGAAAGGCCATGGATGTAGAAAGAGAAAGGCAGTGGGAGCAAGAGGGAGAGTGAATCTGGCACAACGTTCTGAAATGACCGGAGGGGTGTATTTGTTTAGCTGTTGACTCCACCTTTAAGTGTAGAGCCACAGAGCTGATTGTTGGCAAGCCCTCCCCAAAATATATGAAACGTGGCAAGAGTAAAGAAGGTTGAGCTCTGAGCTGATTGAAGTGCTTGGCTGAAAAGAGGGGCGGAATGAATTTGAGTATTGAGTCAGAAACGGATAAGAGGGAATCACCAACAGGTAGAGCATGTGCTTTCCAATGTGAACCTTCATTTGAAATGgcaaacaaccccccccccccagtgatCTTTCTTCTGAAGCAGACTGGATGGACAACAAAGTGTGTTCTTTCTTTAGCCCAAATATTAATTACAATGATAACATTTAATCATTTGTTATCTatttgaaaaatgtgacaaacatAATTATCTATCTAGTAGTAACCTCTGTTAGGTATTACAGTGCGACTGAACACATAAGGGACATGGCAGCGATGTTACGTGGCTCAGTTTGACTGACaggtctacgtgtgtgtgtgtcctttattTTCCATGATTGCTATCCTGTTGTCTTGCTGTAGTTAATCATGAGATCAGCGCCTTGTGCCTtttcctcccccccctctctctctcctgttcaGTCGGGTTTACTCATTTTCTACTCCTGCTCTTCCTTTCCTGTCTCCATGGTTACTGAAGCATCACGTTCCAGTCTACCCCTGCGTTCATGCCGGGCTTGCGGAGCGTCAACACAGACATGGAGGCGTCAAAGTCAAACTCTAGTTGGCTCTCCTGACCATCAGCAGTCTTCAGGGTCACTGTGCTGGGTTTACTGGCTCCCAGTATGACAATGCGTTCAATCCAGGATTGGGTGGTAAACTGGGCATCTGGAGCCAAGTTAACAGAAGAGAGGATGTTGTTAGCGAAGGACAGCCTCCTGTGGATGAACTCCTTCTTGTCATAGTTGAAGGTGTGGCCATCATCTATGTAGAGCTTACCCTCTGCAGTTCTCTGTcaaagaaaaagtcaaaaatcaaGTATGACAATGCAACATTTTCAAATAGCAGTGGGTGACAGTTGTGTGTTGGCAGCTGTCATTGAGGGTATGTGCAATTGAGTTACCTGGGGGTTAAGAGCCACATATAAAGTGTAGGGATCGTGCATCATGCATGAGGAGGACCTGCGAACTCGAATCTTCTTGGGAATAATGGAGCCGCCCCGCTGGAACACTGGAATctggaaagaagacagaaagctCCATTTTacagaggaaacaaggaaaatACTATTAAAAAGGATGTGGAGGGCGCCAAAATGTAGAAATTGTGCATCTTACAGAGCTCATGGTGACAGGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144013 lncRNA upstream 3776 22915294 ~ 22916077 (+) True G107182
TU144007 lncRNA upstream 10338 22909076 ~ 22909515 (+) False ubxn1
TU143999 lncRNA upstream 31962 22884077 ~ 22887891 (+) True G107170
XR_005640493.1 lncRNA upstream 44755 22867472 ~ 22875098 (+) True LOC120566955
TU143993 lncRNA upstream 45017 22867079 ~ 22874836 (+) False LOC120566955
TU144020 lncRNA downstream 1819 22925809 ~ 22926736 (+) True G107187
TU144024 lncRNA downstream 5279 22929269 ~ 22932162 (+) True G107191
TU144034 lncRNA downstream 26605 22950595 ~ 22997038 (+) False rom1b
TU144039 lncRNA downstream 34168 22958158 ~ 22958580 (+) True G107203
TU144112 lncRNA downstream 176051 23100041 ~ 23127134 (+) False flrt1b
XM_039813606.1 mRNA upstream 10291 22903755 ~ 22909562 (+) True ubxn1
XM_039813836.1 mRNA upstream 40382 22877797 ~ 22879471 (+) True map1lc3cl
XM_039813683.1 mRNA upstream 57774 22858625 ~ 22862079 (+) True ttc9c
XM_039813685.1 mRNA upstream 57774 22858828 ~ 22862079 (+) False ttc9c
XM_039813681.1 mRNA upstream 64152 22847118 ~ 22855701 (+) False LOC120566951
XM_039813612.1 mRNA downstream 18472 22942462 ~ 22949531 (+) True LOC120566913
XM_039813065.1 mRNA downstream 55329 22979319 ~ 22987555 (+) True LOC120566541
XM_039814411.1 mRNA downstream 66974 22990964 ~ 22996988 (+) True rom1b
XM_039813822.1 mRNA downstream 74536 22998526 ~ 23039438 (+) False ccdc88b
XM_039813823.1 mRNA downstream 74539 22998529 ~ 23039438 (+) True ccdc88b
TU143990 other upstream 54177 22862190 ~ 22865676 (+) True G107163
XR_005640584.1 other upstream 1458403 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2567686 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2858515 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 3314080 19604840 ~ 19605773 (+) False G106237
TU143997 other downstream 30982 22954972 ~ 22973761 (+) True G107168
TU144145 other downstream 334281 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 344801 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 530577 23454567 ~ 23466184 (+) False ubl3b
TU144289 other downstream 564311 23488301 ~ 23491358 (+) False LOC120566905

Expression Profile