RNA id: XM_039814411.1


Basic Information

Item Value
RNA id XM_039814411.1
length 2707
RNA type mRNA
GC content 0.48
exon number 5
gene id rom1b
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22950595 ~ 22997038 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAGGATTACGGCTCCAAACTCTCGACTTTGGCCAGTTTCTGTTTTCTCCAAAGATGGGAACAGCGGTTTAGGGGGTCGCCGCACATGCACAGACCCAGAGGGGCGCCATCAAAAGACAACATCACATCAAGAGAAAGAAATCAGCTTGAAGGGGGGGCTACGGCGGTGTGACCAATCAACTTGAGGAGAAAGGAATACATCTTTTCTTCCACAATTCATTATTTGACAATCATCACATATTTTTCAAAGTTTTGCTGCACTGCTTTTgattataaatcatctttttgGGACAATTTCAGCATCCAAGTGAAAGCTTTTGGATTATCCTCTGAGGTCGACTGTGTCCTTTATCATCTGAGGGATCTACCTGCTTATCGCCTCCACCTGGAATAACTTAGATGAGCTCAACCAGCTAATAACTCACCAAACAACAAGCACAAGGCCTGTATTGACCACTGTGTTTCTGCAACGTTGAAAACACCCTCTTGTGACCTCAGTTGGGTTTGTCTCTTTACGTGCAGCTGGCCGTCTCTGGATCTCAAGTTTTGACCAGAACTGACTGAactccttcctcttctctccgCTTCTCTTACTTTTCTCTCCTGAACTTTTGCGTTGATCGGTGCATGGTAGTGAGCCATGCTGTTGAAGATAAAGTTCACCCAGCAGCGGCGGGTGCACCTGGCCCAGGGCCTGTGGCTGCTGTCCTGGATGGCAGTGATGTGGGGGGTCATCATCTTTTGTCTGGGGGTTTACCTTAAGACAGAGCTGCTCCGTAGGGCCGAGGTGATGGACAACACAGAGATCCACGTGGTGCCCAACATCCTGATGATGGTGGGCCTGGCCTCCATCGGCACCAACTGGGTTGCCAGTCGCGCGTGTCAGGACTCCTTGGATGCAACCCGCTTCCCACGTTGGAAAGTTTTCCTGCTGGCTTGGTTTGCTGTAGCTGCAGTGCTCTGTTGTTTGCTCATCGCTGTTGTGGTGCTCAGCTACGCCCTGCAGGGAAGCCTGGAGGAGTCCCTGAAGGTGGGCCTGAGGAATGGTATTCGGTTCTACAAGGACACAGATGTGCCAGGCCGTTGTTTTCAGAAAGAAACCATCGATCGTCTGCAGATGGAGTTTCGCTGTTGTGGGAACAGCAACTTCAAGGATTGGTTTGAAGTTCAGTGGGTCAGCAACAGATACCTAGACTTCACCTCCAAGGACGTCAAGGATCGTATCCGGAGTAATGTGGACGGCCGTTACCTGTTGGATGGCGTTCCTTTCAGCTGTTGTAACCCCGCTTCCCCTCGCCCCTGCCTGCAGCTGCAACTGACCGATAACAGCGCCCACTACAACTACGAGTACCAATCAGAGGAACTCAACCTGTACAGCCGTGGCTGTAGGCAGGCCCTGACTGACTACTTCATGGAGCTGATGAACTCAACTGGTCCTGGTGTGCTGTCAGTCATGTTAATACAGCTGTCAGTATGTCTGAGCCTGCGGTACCTGCAGACGGCCGTGGAAGGAGCTATGGCTCTGGAGGACCCAGAGGGCGACAGTGAGGGTTATCTCCTGGAAAAGGGTGTGAAGGAAACCATTGAGGACCTCAAAGCCAATGCCCTGAAGATGCTAAAGTTTGGGCAGGTTGACCCCAACGCCGCCGAAGGGTCCTCTGAGGCTGCAGATGCCGAGAAAGCTGAGAAGACTGCGTCCCCTACTCCTGCCAGTTAGAGGGgagaaattatttaaataagaGCTGTGGTGAAAGGGATTCAGGGGGGATGTGTTTGAGGTTTCTTGGTTGTGTGAGTTGGCAGGTGGCGGGTACAACACCAGTTGAGTTTTGACATGTTAGGTTTGATTTACGCTTCACCAATGCAGCAGCCACAGCTGTCTCGCACATGGCCAAAACAAGGCAACAAATAGGGAATCTTATCAGGCCCTCCACAGACACCAAAACAAACATCTCCTCTATGCAGGACCTAATGAATGTTTAACCATCAAAGAATCTGCTCAGGAGATAGTAGGCTACTTTTTGTTGTAACTAGAAGAGAGAACATTCAGTTTAAAGTGGTGTAGCtttcacacacagcagacacaacAGACACATATTTAACACTTTACATTTGGCTCTAATTTGGCAAAGTCACAATTCACACAATGCTTAAGGTCATCACATGTGCACTGTAATATTCATCTCAGGGCTGTAGAGTTTGTACTGAACTGCAATGAAATGCTTAGGAACCTGTTAAAATGGCACATGAATTATATATTAAAGGTAGAAGTTTTTAACTGCTTTGCAGTGTGGGCTTCCTTTTGTACATGTAATATAATAGAGTAGGGAATTTCCCTAAGTATGGGTTATCTGAGTTCAGCAAGGAGAGTTggattaagtgtgtgtgtgtgtgtgttgtgtgtgtgtgtatatgtgcatgaGTGCTGTGCCCTATATGAAGCTGTCATCTTGTCTATTGTGACAGCTCAGAAACAATCTGATAATCCCGGTGTGGTTAATCCCAGAACTGCTGTACAAGCAGCATCAGCACATAGGAACACACTCTGTCATACAGGGACAGAAACAGCACACTGATGCAACAAGTTGGAAGTTATTTTTGAAAGCAAAACCGTTTGTAAATGCtttttttgtgcaaataatATAACATTGTGATCTGCCCTAGCTATCCAAATGTGTTCTTCTTAAATAAAACACTGTCACGGAA

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144039 lncRNA upstream 32384 22958158 ~ 22958580 (+) True G107203
TU144017 lncRNA upstream 34065 22919853 ~ 22956899 (+) False G107185
TU144024 lncRNA upstream 58802 22929269 ~ 22932162 (+) True G107191
TU144020 lncRNA upstream 64228 22925809 ~ 22926736 (+) True G107187
TU144016 lncRNA upstream 66974 22919853 ~ 22923990 (+) True G107185
TU144112 lncRNA downstream 103053 23100041 ~ 23127134 (+) False flrt1b
TU144140 lncRNA downstream 240263 23237251 ~ 23237450 (+) True G107276
TU144215 lncRNA downstream 273811 23270799 ~ 23271221 (+) True G107334
TU144222 lncRNA downstream 285991 23282979 ~ 23285214 (+) True G107341
TU144221 lncRNA downstream 288375 23285363 ~ 23287678 (+) True G107340
XM_039813065.1 mRNA upstream 3409 22979319 ~ 22987555 (+) True LOC120566541
XM_039813612.1 mRNA upstream 41433 22942462 ~ 22949531 (+) True LOC120566913
XM_039813606.1 mRNA upstream 81402 22903755 ~ 22909562 (+) True ubxn1
XM_039813836.1 mRNA upstream 111493 22877797 ~ 22879471 (+) True map1lc3cl
XM_039813683.1 mRNA upstream 128885 22858625 ~ 22862079 (+) True ttc9c
XM_039813822.1 mRNA downstream 1538 22998526 ~ 23039438 (+) False ccdc88b
XM_039813823.1 mRNA downstream 1541 22998529 ~ 23039438 (+) True ccdc88b
XM_039813821.1 mRNA downstream 1541 22998529 ~ 23039438 (+) False ccdc88b
XM_039812863.1 mRNA downstream 103037 23100025 ~ 23132685 (+) False flrt1b
XM_039812861.1 mRNA downstream 109218 23106206 ~ 23132685 (+) True flrt1b
TU143997 other upstream 17203 22954972 ~ 22973761 (+) True G107168
TU143990 other upstream 125288 22862190 ~ 22865676 (+) True G107163
XR_005640584.1 other upstream 1529514 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2638797 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2929626 20043031 ~ 20061338 (+) False LOC120566323
TU144145 other downstream 261283 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 271803 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 457579 23454567 ~ 23466184 (+) False ubl3b
TU144289 other downstream 491313 23488301 ~ 23491358 (+) False LOC120566905
TU144290 other downstream 491313 23488301 ~ 23491358 (+) False LOC120566905

Expression Profile