RNA id: TU144039


Basic Information

Item Value
RNA id TU144039
length 278
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G107203
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22958158 ~ 22958580 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATCTTCTGTTGGTACTCTTCTGCTGACAGGAACTTCCCCAccTAAAAAGCGGTGTGAGGACTACGGCACCTGCATTGCCAAACTCGAAGGCGGTGAGCAGCTGAGGCAGGACCTTGTGTTTACAGAAGTCTTCCGGGAAGGAGTCCAGATTCTCACTCAGATCCTGGAAGAACTGCTGCTTCTCAGCCGGCTCCTTGatctggagagagagaaaaagttaGAATTCCACTATTATAATTATCcttttactattattattaatacgATCGTCACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144017 lncRNA upstream 1259 22919853 ~ 22956899 (+) False G107185
TU144024 lncRNA upstream 25996 22929269 ~ 22932162 (+) True G107191
TU144020 lncRNA upstream 31422 22925809 ~ 22926736 (+) True G107187
TU144016 lncRNA upstream 34168 22919853 ~ 22923990 (+) True G107185
TU144013 lncRNA upstream 42081 22915294 ~ 22916077 (+) True G107182
TU144112 lncRNA downstream 141461 23100041 ~ 23127134 (+) False flrt1b
TU144140 lncRNA downstream 278671 23237251 ~ 23237450 (+) True G107276
TU144215 lncRNA downstream 312219 23270799 ~ 23271221 (+) True G107334
TU144222 lncRNA downstream 324399 23282979 ~ 23285214 (+) True G107341
TU144221 lncRNA downstream 326783 23285363 ~ 23287678 (+) True G107340
XM_039813612.1 mRNA upstream 8627 22942462 ~ 22949531 (+) True LOC120566913
XM_039813606.1 mRNA upstream 48596 22903755 ~ 22909562 (+) True ubxn1
XM_039813836.1 mRNA upstream 78687 22877797 ~ 22879471 (+) True map1lc3cl
XM_039813683.1 mRNA upstream 96079 22858625 ~ 22862079 (+) True ttc9c
XM_039813065.1 mRNA downstream 20739 22979319 ~ 22987555 (+) True LOC120566541
XM_039814411.1 mRNA downstream 32384 22990964 ~ 22996988 (+) True rom1b
XM_039813822.1 mRNA downstream 39946 22998526 ~ 23039438 (+) False ccdc88b
XM_039813823.1 mRNA downstream 39949 22998529 ~ 23039438 (+) True ccdc88b
XM_039813821.1 mRNA downstream 39949 22998529 ~ 23039438 (+) False ccdc88b
TU143990 other upstream 92482 22862190 ~ 22865676 (+) True G107163
XR_005640584.1 other upstream 1496708 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2605991 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 2896820 20043031 ~ 20061338 (+) False LOC120566323
TU142686 other upstream 3352385 19604840 ~ 19605773 (+) False G106237
TU144145 other downstream 299691 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 310211 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 495987 23454567 ~ 23466184 (+) False ubl3b
TU144289 other downstream 529721 23488301 ~ 23491358 (+) False LOC120566905
TU144290 other downstream 529721 23488301 ~ 23491358 (+) False LOC120566905

Expression Profile