RNA id: TU144112


Basic Information

Item Value
RNA id TU144112
length 1309
lncRNA type sense_over
GC content 0.46
exon number 2
gene id flrt1b
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23100025 ~ 23132685 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAGGGAGATGCAGGACTACATCtgctggaaacaaaacaacaagatGGAGTgtacttcttcttcctctttcttggGAGGGTGGTGCTCACTAACACTGAGCCAGCTGTCCTGCTGAAGCAAACACCAGTGAAGTCTACCTTGAGGATACTAGACGGTGGTCCATTTCTGCTAACCTGTGGGGGAACTTTTCACACTGAGCCACGTGACAACGCCGCTCAGAGCggactacatacagtacacactcaTCGGGCCTTGCTGTTTCTGAAGAGCATCTGTGTGAACTGAAAAGGAAGCGATTAAACATTAGAGAGTGAGGCGGAAACTGAGAGGAGAAAGAAGCATCTGAACCTAACTCTTACAGCCTGTATTCTGCACCGGGCCAAACTGTCCATCACAGCCTCAAACATACTCATTACCATCACTGAACTGTGAAATGTATGTTGTTATAATCGTTATAATACAACTAATAATTGTAAGGACTCTTTGCTTGATTTTTTTGAGCCTTGGAAATCCCACTTATTCTCTTCTTGCTGCTCATTAATTAAAACCATTACCTGGTTATTCAAAGCAAGCGTAGCACGGCACTATTACTATTTTTGCATGACCCACTGCGTATCCATTAGTATCCAGGATTGCTTTTGACTTCGAAGAAGGACCCTTGAGCCCTCAACCATCTTCTGACTATCTGCCCAACTGTAGCATTTTGGTGTGGTGTGGTGGTTTCAGAATTAGACCTCTGGACGCTCGATGAAGATGACTTGAGTTGGCAGGCCTAAAAGCCCCTTACCccagagagataaagagagagcgCTTGGCAgtaggacacacacaacacacaaatgtGGGTGCCGAAGCGGCTTTGAGCCATGCTGGTGTTGCTACTCGTGGAGCCCTGGAGTACAGGCTATCATCATCCCTATCATCATTCACCCAAGCTGAGGAAGATTCAACGGCCCAGAGGAGCGAGGCTACACTTGTGAACGATTCAAAGACTGGGAAACTGCGCTAACACACAGAGATCCACAGCTACATCCGTAAtaacaaatacagacacactaatACTCCTCTCCACAAATCTTTGATACAGGAAAAACAAAGCTGCGGCGGACGTGAAAGGCACAGAGACTGAGCAGGTTAGCAAGCCCTCTGCAATCACACCCTGGGTCGATCAGACCTTACACAGACACTTTCTTCCTGCGTTCACCGCAATGAAGAACACCACACTTACATCTTGCTTTCAGCTACATGAtagtacaaaaacacaaacacacactggctctGTGCTCACACAAAGGCTTTTATTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144034 lncRNA upstream 103003 22950595 ~ 22997038 (+) False rom1b
TU144039 lncRNA upstream 141461 22958158 ~ 22958580 (+) True G107203
TU144017 lncRNA upstream 143142 22919853 ~ 22956899 (+) False G107185
TU144024 lncRNA upstream 167879 22929269 ~ 22932162 (+) True G107191
TU144020 lncRNA upstream 173305 22925809 ~ 22926736 (+) True G107187
TU144140 lncRNA downstream 110117 23237251 ~ 23237450 (+) True G107276
TU144215 lncRNA downstream 143665 23270799 ~ 23271221 (+) True G107334
TU144222 lncRNA downstream 155845 23282979 ~ 23285214 (+) True G107341
TU144221 lncRNA downstream 158229 23285363 ~ 23287678 (+) True G107340
TU144238 lncRNA downstream 192258 23319392 ~ 23320649 (+) True G107353
XM_039813822.1 mRNA upstream 60603 22998526 ~ 23039438 (+) False ccdc88b
XM_039813823.1 mRNA upstream 60603 22998529 ~ 23039438 (+) True ccdc88b
XM_039813821.1 mRNA upstream 60603 22998529 ~ 23039438 (+) False ccdc88b
XM_039814411.1 mRNA upstream 103053 22990964 ~ 22996988 (+) True rom1b
XM_039813065.1 mRNA upstream 112486 22979319 ~ 22987555 (+) True LOC120566541
XM_039812890.1 mRNA downstream 31235 23158369 ~ 23173854 (+) True fermt3b
XM_039812875.1 mRNA downstream 49704 23176838 ~ 23182934 (+) True zbtb3
XM_039812874.1 mRNA downstream 49705 23176839 ~ 23182934 (+) False zbtb3
XM_039812878.1 mRNA downstream 49705 23176839 ~ 23182934 (+) False zbtb3
XM_039812877.1 mRNA downstream 50572 23177706 ~ 23182934 (+) False zbtb3
TU143997 other upstream 126280 22954972 ~ 22973761 (+) True G107168
TU143990 other upstream 234365 22862190 ~ 22865676 (+) True G107163
XR_005640584.1 other upstream 1638591 21448804 ~ 21461450 (+) False stx3a
TU143018 other upstream 2747874 20351721 ~ 20352167 (+) True G106465
XR_005640374.1 other upstream 3038703 20043031 ~ 20061338 (+) False LOC120566323
TU144145 other downstream 131137 23258271 ~ 23262229 (+) False tgfb5
TU144214 other downstream 141657 23268791 ~ 23270216 (+) True G107333
TU144280 other downstream 327433 23454567 ~ 23466184 (+) False ubl3b
TU144289 other downstream 361167 23488301 ~ 23491358 (+) False LOC120566905
TU144290 other downstream 361167 23488301 ~ 23491358 (+) False LOC120566905

Expression Profile